Gene annotation
Transcriptome id Sobic.010G221100.1
Synonym Sb10g026650
Functional annotation RING-H2 finger protein, putative, expressed
UniProt A0A1W0VUA3
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF133
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G05280 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g45580.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK17031
Barley HORVU7Hr1G108590.1
Wheat TraesCS7B02G380600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G091850 - -
2 Sobic.004G170600 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.001G006300 MYB family transcription factor, putative, expressed -
4 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
5 Sobic.003G283100 OsSub3 - Putative Subtilisin homologue, expressed -
6 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
7 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
8 Sobic.005G084000 expressed protein -
9 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
10 Sobic.005G022800 GTP binding protein, putative, expressed -
11 Sobic.008G117600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Glutaredoxin family protein (Os)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.001G142400 RIO1 family protein, expressed -
13 Sobic.007G201400 pentatricopeptide, putative, expressed -
14 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
16 Sobic.003G373300 DNA polymerase I, putative, expressed -
17 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
18 Sobic.008G008500 protein phosphatase 2c, putative, expressed -
19 Sobic.009G136900 peptide transporter PTR2, putative, expressed -
20 Sobic.007G116100 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic010G221100 Sobic010G221100 Sobic003G091850 Sobic003G091850 Sobic010G221100--Sobic003G091850 Sobic004G170600 Sobic004G170600 Sobic010G221100--Sobic004G170600 Sobic001G006300 Sobic001G006300 Sobic010G221100--Sobic001G006300 Sobic008G021700 Sobic008G021700 Sobic010G221100--Sobic008G021700 Sobic003G283100 Sobic003G283100 Sobic010G221100--Sobic003G283100 Sobic005G197300 Sobic005G197300 Sobic010G221100--Sobic005G197300 Sobic004G263200 Sobic004G263200 Sobic010G221100--Sobic004G263200 Sobic005G084000 Sobic005G084000 Sobic010G221100--Sobic005G084000 Sobic006G263800 Sobic006G263800 Sobic010G221100--Sobic006G263800 Sobic008G182500 Sobic008G182500 Sobic003G091850--Sobic008G182500 Sobic002G394550 Sobic002G394550 Sobic003G091850--Sobic002G394550 Sobic003G257800 Sobic003G257800 Sobic003G091850--Sobic003G257800 Sobic008G178300 Sobic008G178300 Sobic003G091850--Sobic008G178300 Sobic005G108300 Sobic005G108300 Sobic003G091850--Sobic005G108300 Sobic006G062400 Sobic006G062400 Sobic003G091850--Sobic006G062400 Sobic004G046001 Sobic004G046001 Sobic003G091850--Sobic004G046001 Sobic010G104200 Sobic010G104200 Sobic003G091850--Sobic010G104200 Sobic002G284600 Sobic002G284600 Sobic003G091850--Sobic002G284600 Sobic009G056400 Sobic009G056400 Sobic004G170600--Sobic009G056400 Sobic001G138000 Sobic001G138000 Sobic004G170600--Sobic001G138000 Sobic004G170600--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic004G170600--Sobic002G190100 Sobic009G196200 Sobic009G196200 Sobic004G170600--Sobic009G196200 Sobic002G064400 Sobic002G064400 Sobic004G170600--Sobic002G064400 Sobic001G142400 Sobic001G142400 Sobic004G170600--Sobic001G142400 Sobic004G006100 Sobic004G006100 Sobic004G170600--Sobic004G006100 Sobic001G120000 Sobic001G120000 Sobic004G170600--Sobic001G120000 Sobic005G162000 Sobic005G162000 Sobic001G006300--Sobic005G162000 Sobic003G230200 Sobic003G230200 Sobic001G006300--Sobic003G230200 Sobic003G009900 Sobic003G009900 Sobic001G006300--Sobic003G009900 Sobic001G387700 Sobic001G387700 Sobic001G006300--Sobic001G387700 Sobic006G135525 Sobic006G135525 Sobic001G006300--Sobic006G135525 Sobic002G020000 Sobic002G020000 Sobic001G006300--Sobic002G020000 Sobic005G056201 Sobic005G056201 Sobic001G006300--Sobic005G056201 Sobic001G394250 Sobic001G394250 Sobic001G006300--Sobic001G394250 Sobic001G003600 Sobic001G003600 Sobic001G006300--Sobic001G003600 Sobic004G151900 Sobic004G151900 Sobic008G021700--Sobic004G151900 Sobic009G251300 Sobic009G251300 Sobic008G021700--Sobic009G251300 Sobic005G022800 Sobic005G022800 Sobic008G021700--Sobic005G022800 Sobic004G246800 Sobic004G246800 Sobic008G021700--Sobic004G246800 Sobic001G076200 Sobic001G076200 Sobic008G021700--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic008G021700--Sobic002G209600 Sobic008G021700--Sobic001G142400 Sobic005G077933 Sobic005G077933 Sobic008G021700--Sobic005G077933 Sobic001G061600 Sobic001G061600 Sobic008G021700--Sobic001G061600 Sobic001G228300 Sobic001G228300 Sobic003G283100--Sobic001G228300 Sobic005G142900 Sobic005G142900 Sobic003G283100--Sobic005G142900 Sobic003G283100--Sobic001G120000 Sobic003G283100--Sobic006G263800 Sobic001G255400 Sobic001G255400 Sobic003G283100--Sobic001G255400 Sobic003G392000 Sobic003G392000 Sobic003G283100--Sobic003G392000 Sobic010G270900 Sobic010G270900 Sobic003G283100--Sobic010G270900 Sobic003G283100--Sobic004G170600 Sobic004G055600 Sobic004G055600 Sobic003G283100--Sobic004G055600 Sobic005G197300--Sobic005G022800 Sobic001G514100 Sobic001G514100 Sobic005G197300--Sobic001G514100 Sobic001G099000 Sobic001G099000 Sobic005G197300--Sobic001G099000 Sobic004G255500 Sobic004G255500 Sobic005G197300--Sobic004G255500 Sobic006G273400 Sobic006G273400 Sobic005G197300--Sobic006G273400 Sobic005G197300--Sobic004G263200 Sobic001G022500 Sobic001G022500 Sobic005G197300--Sobic001G022500 Sobic005G197300--Sobic002G209600 Sobic004G225600 Sobic004G225600 Sobic005G197300--Sobic004G225600 Sobic003G162800 Sobic003G162800 Sobic004G263200--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic004G263200--Sobic003G327200 Sobic004G003900 Sobic004G003900 Sobic004G263200--Sobic004G003900 Sobic004G214400 Sobic004G214400 Sobic004G263200--Sobic004G214400 Sobic007G101300 Sobic007G101300 Sobic004G263200--Sobic007G101300 Sobic004G263200--Sobic005G197300 Sobic003G128400 Sobic003G128400 Sobic004G263200--Sobic003G128400 Sobic010G027200 Sobic010G027200 Sobic004G263200--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic004G263200--Sobic002G140000 Sobic001G495300 Sobic001G495300 Sobic005G084000--Sobic001G495300 Sobic007G210600 Sobic007G210600 Sobic005G084000--Sobic007G210600 Sobic008G131700 Sobic008G131700 Sobic005G084000--Sobic008G131700 Sobic005G084000--Sobic001G142400 Sobic003G074700 Sobic003G074700 Sobic005G084000--Sobic003G074700 Sobic004G143400 Sobic004G143400 Sobic005G084000--Sobic004G143400 Sobic009G083300 Sobic009G083300 Sobic005G084000--Sobic009G083300 Sobic007G201400 Sobic007G201400 Sobic005G084000--Sobic007G201400 Sobic003G069200 Sobic003G069200 Sobic005G084000--Sobic003G069200 Sobic007G116100 Sobic007G116100 Sobic006G263800--Sobic007G116100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic006G263800--Sobic001G281500 Sobic006G263800--Sobic005G022800 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic006G263800--Sobic006G237100 Sobic006G263800--Sobic001G120000
Octagon: transcription factors


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