Gene annotation
Transcriptome id Sobic.010G257600.1
Synonym ATRER1A, Sb10g029440
Functional annotation Rer1 protein, putative, expressed
UniProt C5Z9C2
Pfam PF03248
Panther DB PTHR10743
NCBI CDD KOG1688; Golgi proteins involved in ER retention (RER)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G39220 : Rer1 family protein
RAP-DB (Rice) LOC_Os06g49460.1 : Rer1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a041758 , Zm00025a018425 , Zm00025a035407
Brachypodium KQK17485 , KQK02287
Barley HORVU3Hr1G000490.4 , HORVU3Hr1G000490.5 , HORVU3Hr1G000490.2 , HORVU3Hr1G000490.3 , HORVU3Hr1G000490.1 , HORVU7Hr1G095770.1 , HORVU7Hr1G095770.3 , HORVU7Hr1G095770.2 , HORVU7Hr1G095770.4
Wheat TraesCSU02G055900 , TraesCSU02G055900 , TraesCS2A02G137100 , TraesCS2B02G563600 , TraesCS3A02G002300 , TraesCS7A02G410200 , TraesCSU02G151000 , TraesCS7B02G309600 , TraesCS7A02G410200 , TraesCS3B02G001900 , TraesCS7D02G403400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G171501 - -
2 Sobic.001G418800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-acetylglucosaminyltransferase, putative, expressed -
3 Sobic.001G218800 expressed protein -
4 Sobic.004G018400 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
5 Sobic.008G118600 riboflavin synthase alpha chain, putative, expressed K00793: ribE, riboflavin synthase
6 Sobic.001G012100 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed -
7 Sobic.009G127300 pentatricopeptide repeat-containing protein, putative, expressed -
8 Sobic.001G011800 SAM domain containing protein, putative, expressed -
9 Sobic.009G233700 CobW/P47K family protein, putative, expressed K03189: urease accessory protein
10 Sobic.006G276200 F-box domain containing protein, expressed -
11 Sobic.001G188700 OST3/OST6 family protein, putative, expressed K12669: OST3, oligosaccharyltransferase complex subunit gamma
12 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.004G217600 expressed protein -
14 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
15 Sobic.001G039800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.010G000300 transmembrane BAX inhibitor motif-containing protein, putative, expressed -
17 Sobic.007G180000 RNA recognition motif containing protein, putative, expressed -
18 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
19 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
20 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -


Gene co-expression network
sample Sobic010G257600 Sobic010G257600 Sobic010G171501 Sobic010G171501 Sobic010G257600--Sobic010G171501 Sobic001G418800 Sobic001G418800 Sobic010G257600--Sobic001G418800 Sobic001G218800 Sobic001G218800 Sobic010G257600--Sobic001G218800 Sobic004G018400 Sobic004G018400 Sobic010G257600--Sobic004G018400 Sobic008G118600 Sobic008G118600 Sobic010G257600--Sobic008G118600 Sobic001G012100 Sobic001G012100 Sobic010G257600--Sobic001G012100 Sobic009G127300 Sobic009G127300 Sobic010G257600--Sobic009G127300 Sobic001G011800 Sobic001G011800 Sobic010G257600--Sobic001G011800 Sobic009G233700 Sobic009G233700 Sobic010G257600--Sobic009G233700 Sobic009G131100 Sobic009G131100 Sobic010G171501--Sobic009G131100 Sobic001G536500 Sobic001G536500 Sobic010G171501--Sobic001G536500 Sobic005G127100 Sobic005G127100 Sobic010G171501--Sobic005G127100 Sobic003G003000 Sobic003G003000 Sobic010G171501--Sobic003G003000 Sobic001G198200 Sobic001G198200 Sobic010G171501--Sobic001G198200 Sobic004G311300 Sobic004G311300 Sobic010G171501--Sobic004G311300 Sobic006G108600 Sobic006G108600 Sobic010G171501--Sobic006G108600 Sobic005G080200 Sobic005G080200 Sobic010G171501--Sobic005G080200 Sobic001G081400 Sobic001G081400 Sobic010G171501--Sobic001G081400 Sobic001G380500 Sobic001G380500 Sobic001G418800--Sobic001G380500 Sobic001G418800--Sobic001G218800 Sobic002G174900 Sobic002G174900 Sobic001G418800--Sobic002G174900 Sobic006G028300 Sobic006G028300 Sobic001G418800--Sobic006G028300 Sobic010G108900 Sobic010G108900 Sobic001G418800--Sobic010G108900 Sobic001G151900 Sobic001G151900 Sobic001G418800--Sobic001G151900 Sobic001G222900 Sobic001G222900 Sobic001G418800--Sobic001G222900 Sobic003G004700 Sobic003G004700 Sobic001G418800--Sobic003G004700 Sobic002G339500 Sobic002G339500 Sobic001G418800--Sobic002G339500 Sobic001G218800--Sobic010G108900 Sobic001G218800--Sobic003G004700 Sobic010G176500 Sobic010G176500 Sobic001G218800--Sobic010G176500 Sobic003G123000 Sobic003G123000 Sobic001G218800--Sobic003G123000 Sobic010G000300 Sobic010G000300 Sobic001G218800--Sobic010G000300 Sobic001G218800--Sobic001G380500 Sobic006G087100 Sobic006G087100 Sobic001G218800--Sobic006G087100 Sobic006G233300 Sobic006G233300 Sobic001G218800--Sobic006G233300 Sobic009G108500 Sobic009G108500 Sobic001G218800--Sobic009G108500 Sobic001G427700 Sobic001G427700 Sobic004G018400--Sobic001G427700 Sobic004G018400--Sobic003G003000 Sobic001G416300 Sobic001G416300 Sobic004G018400--Sobic001G416300 Sobic010G094800 Sobic010G094800 Sobic004G018400--Sobic010G094800 Sobic001G320700 Sobic001G320700 Sobic004G018400--Sobic001G320700 Sobic003G402200 Sobic003G402200 Sobic004G018400--Sobic003G402200 Sobic002G117200 Sobic002G117200 Sobic004G018400--Sobic002G117200 Sobic009G190800 Sobic009G190800 Sobic004G018400--Sobic009G190800 Sobic001G315800 Sobic001G315800 Sobic004G018400--Sobic001G315800 Sobic004G124100 Sobic004G124100 Sobic008G118600--Sobic004G124100 Sobic009G124000 Sobic009G124000 Sobic008G118600--Sobic009G124000 Sobic004G028000 Sobic004G028000 Sobic008G118600--Sobic004G028000 Sobic004G248900 Sobic004G248900 Sobic008G118600--Sobic004G248900 Sobic003G216500 Sobic003G216500 Sobic008G118600--Sobic003G216500 Sobic005G055000 Sobic005G055000 Sobic008G118600--Sobic005G055000 Sobic001G376700 Sobic001G376700 Sobic008G118600--Sobic001G376700 Sobic004G182500 Sobic004G182500 Sobic008G118600--Sobic004G182500 Sobic006G020900 Sobic006G020900 Sobic008G118600--Sobic006G020900 Sobic002G142066 Sobic002G142066 Sobic001G012100--Sobic002G142066 Sobic004G117800 Sobic004G117800 Sobic001G012100--Sobic004G117800 Sobic001G012100--Sobic001G416300 Sobic010G080300 Sobic010G080300 Sobic001G012100--Sobic010G080300 Sobic001G012100--Sobic009G190800 Sobic007G132500 Sobic007G132500 Sobic001G012100--Sobic007G132500 Sobic009G141400 Sobic009G141400 Sobic001G012100--Sobic009G141400 Sobic001G012100--Sobic004G018400 Sobic006G052200 Sobic006G052200 Sobic001G012100--Sobic006G052200 Sobic009G127300--Sobic001G011800 Sobic003G436500 Sobic003G436500 Sobic009G127300--Sobic003G436500 Sobic004G023900 Sobic004G023900 Sobic009G127300--Sobic004G023900 Sobic006G276200 Sobic006G276200 Sobic009G127300--Sobic006G276200 Sobic001G147100 Sobic001G147100 Sobic009G127300--Sobic001G147100 Sobic009G127300--Sobic004G028000 Sobic009G127300--Sobic001G218800 Sobic002G037800 Sobic002G037800 Sobic009G127300--Sobic002G037800 Sobic009G127300--Sobic001G012100 Sobic001G011800--Sobic009G127300 Sobic007G181600 Sobic007G181600 Sobic001G011800--Sobic007G181600 Sobic007G050300 Sobic007G050300 Sobic001G011800--Sobic007G050300 Sobic004G298700 Sobic004G298700 Sobic001G011800--Sobic004G298700 Sobic010G079800 Sobic010G079800 Sobic001G011800--Sobic010G079800 Sobic006G094500 Sobic006G094500 Sobic001G011800--Sobic006G094500 Sobic002G400400 Sobic002G400400 Sobic001G011800--Sobic002G400400 Sobic001G011800--Sobic006G276200 Sobic001G011800--Sobic003G436500 Sobic009G233700--Sobic001G081400 Sobic009G233700--Sobic002G117200 Sobic003G098200 Sobic003G098200 Sobic009G233700--Sobic003G098200 Sobic001G132900 Sobic001G132900 Sobic009G233700--Sobic001G132900 Sobic001G136500 Sobic001G136500 Sobic009G233700--Sobic001G136500 Sobic002G353500 Sobic002G353500 Sobic009G233700--Sobic002G353500 Sobic001G188700 Sobic001G188700 Sobic009G233700--Sobic001G188700 Sobic009G233700--Sobic004G018400 Sobic009G065200 Sobic009G065200 Sobic009G233700--Sobic009G065200
Octagon: transcription factors


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