Gene annotation
Transcriptome id Sobic.010G270100.6,Sobic.010G270100.4,Sobic.010G270100.3,Sobic.010G270100.2,Sobic.010G270100.5
Synonym Sb10g030500
Functional annotation OsFBX79 - F-box domain containing protein, expressed
UniProt A0A1W0VV21 , A0A1W0VV48 , A0A194YLP6
Pfam PF08387
Panther DB PTHR32212 PTHR32212:SF118
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26922 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os03g11790.1 : OsFBX79 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS5A02G085700 , TraesCS5A02G085700 , TraesCS5A02G085700 , TraesCS5B02G287000 , TraesCS5B02G287000 , TraesCS5D02G295400 , TraesCS5B02G287800 , TraesCS5A02G303600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G172401 - K07904: Ras-related protein Rab-11A
2 Sobic.006G193400 regulatory protein, putative, expressed -
3 Sobic.010G173300 - -
4 Sobic.010G134650 - -
5 Sobic.005G020600 Mad3/BUB1 homology region 1 domain containing protein, expressed -
6 Sobic.009G163100 kinesin motor domain containing protein, putative, expressed K10403: kinesin family member 22
7 Sobic.003G358600 similar to Phosphorylase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alpha-glucan phosphorylast isozyme, putative, expressed K00688: PYG, glycogen phosphorylase
8 Sobic.004G144800 - -
9 Sobic.008G156600 Leucine Rich Repeat family protein, expressed -
10 Sobic.009G148600 DUF803 domain containing, putative, expressed -
11 Sobic.004G107100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CID11, putative, expressed -
12 Sobic.009G178400 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
13 Sobic.001G384200 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
14 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
15 Sobic.001G072000 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed K00234: SDHA, succinate dehydrogenase (ubiquinone) flavoprotein subunit
16 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
17 Sobic.007G039200 MYB family transcription factor, putative, expressed -
18 Sobic.004G284800 protein kinase, putative, expressed K08867: WNK, WNK lysine deficient protein kinase
19 Sobic.002G299500 expressed protein -
20 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote


Gene co-expression network
sample Sobic010G270100 Sobic010G270100 Sobic002G172401 Sobic002G172401 Sobic010G270100--Sobic002G172401 Sobic006G193400 Sobic006G193400 Sobic010G270100--Sobic006G193400 Sobic010G173300 Sobic010G173300 Sobic010G270100--Sobic010G173300 Sobic010G134650 Sobic010G134650 Sobic010G270100--Sobic010G134650 Sobic005G020600 Sobic005G020600 Sobic010G270100--Sobic005G020600 Sobic009G163100 Sobic009G163100 Sobic010G270100--Sobic009G163100 Sobic003G358600 Sobic003G358600 Sobic010G270100--Sobic003G358600 Sobic004G144800 Sobic004G144800 Sobic010G270100--Sobic004G144800 Sobic008G156600 Sobic008G156600 Sobic010G270100--Sobic008G156600 Sobic002G172401--Sobic005G020600 Sobic002G172401--Sobic008G156600 Sobic005G050400 Sobic005G050400 Sobic002G172401--Sobic005G050400 Sobic002G172401--Sobic009G163100 Sobic001G072000 Sobic001G072000 Sobic002G172401--Sobic001G072000 Sobic001G112600 Sobic001G112600 Sobic002G172401--Sobic001G112600 Sobic004G113600 Sobic004G113600 Sobic002G172401--Sobic004G113600 Sobic004G062200 Sobic004G062200 Sobic002G172401--Sobic004G062200 Sobic004G279200 Sobic004G279200 Sobic002G172401--Sobic004G279200 Sobic006G204400 Sobic006G204400 Sobic006G193400--Sobic006G204400 Sobic007G212500 Sobic007G212500 Sobic006G193400--Sobic007G212500 Sobic006G193400--Sobic003G358600 Sobic003G244400 Sobic003G244400 Sobic006G193400--Sobic003G244400 Sobic001G340800 Sobic001G340800 Sobic006G193400--Sobic001G340800 Sobic001G370400 Sobic001G370400 Sobic006G193400--Sobic001G370400 Sobic009G148600 Sobic009G148600 Sobic006G193400--Sobic009G148600 Sobic006G204500 Sobic006G204500 Sobic006G193400--Sobic006G204500 Sobic001G432200 Sobic001G432200 Sobic006G193400--Sobic001G432200 Sobic004G107100 Sobic004G107100 Sobic010G173300--Sobic004G107100 Sobic006G150300 Sobic006G150300 Sobic010G173300--Sobic006G150300 Sobic006G267100 Sobic006G267100 Sobic010G173300--Sobic006G267100 Sobic010G173300--Sobic003G244400 Sobic007G039200 Sobic007G039200 Sobic010G173300--Sobic007G039200 Sobic009G202000 Sobic009G202000 Sobic010G173300--Sobic009G202000 Sobic010G173300--Sobic004G113600 Sobic004G180100 Sobic004G180100 Sobic010G173300--Sobic004G180100 Sobic002G170100 Sobic002G170100 Sobic010G173300--Sobic002G170100 Sobic006G071362 Sobic006G071362 Sobic010G134650--Sobic006G071362 Sobic001G257800 Sobic001G257800 Sobic010G134650--Sobic001G257800 Sobic003G385300 Sobic003G385300 Sobic010G134650--Sobic003G385300 Sobic010G134650--Sobic007G039200 Sobic009G046900 Sobic009G046900 Sobic010G134650--Sobic009G046900 Sobic008G159701 Sobic008G159701 Sobic010G134650--Sobic008G159701 Sobic003G236000 Sobic003G236000 Sobic010G134650--Sobic003G236000 Sobic006G117700 Sobic006G117700 Sobic010G134650--Sobic006G117700 Sobic010G202200 Sobic010G202200 Sobic010G134650--Sobic010G202200 Sobic005G020600--Sobic009G163100 Sobic002G299500 Sobic002G299500 Sobic005G020600--Sobic002G299500 Sobic005G020600--Sobic008G156600 Sobic005G020600--Sobic001G072000 Sobic005G020600--Sobic009G202000 Sobic008G171900 Sobic008G171900 Sobic005G020600--Sobic008G171900 Sobic005G020600--Sobic001G432200 Sobic001G322400 Sobic001G322400 Sobic005G020600--Sobic001G322400 Sobic005G020600--Sobic001G112600 Sobic009G163100--Sobic008G156600 Sobic009G163100--Sobic005G020600 Sobic009G163100--Sobic008G171900 Sobic009G163100--Sobic001G072000 Sobic009G163100--Sobic002G299500 Sobic009G163100--Sobic005G050400 Sobic001G435700 Sobic001G435700 Sobic009G163100--Sobic001G435700 Sobic009G163100--Sobic001G112600 Sobic009G163100--Sobic001G322400 Sobic001G308000 Sobic001G308000 Sobic003G358600--Sobic001G308000 Sobic003G358600--Sobic006G193400 Sobic009G178400 Sobic009G178400 Sobic003G358600--Sobic009G178400 Sobic009G238650 Sobic009G238650 Sobic003G358600--Sobic009G238650 Sobic007G048101 Sobic007G048101 Sobic003G358600--Sobic007G048101 Sobic003G358600--Sobic006G204400 Sobic002G088600 Sobic002G088600 Sobic003G358600--Sobic002G088600 Sobic003G358600--Sobic001G340800 Sobic003G358600--Sobic003G244400 Sobic009G256601 Sobic009G256601 Sobic004G144800--Sobic009G256601 Sobic004G052600 Sobic004G052600 Sobic004G144800--Sobic004G052600 Sobic005G140900 Sobic005G140900 Sobic004G144800--Sobic005G140900 Sobic008G138400 Sobic008G138400 Sobic004G144800--Sobic008G138400 Sobic006G017700 Sobic006G017700 Sobic004G144800--Sobic006G017700 Sobic002G097300 Sobic002G097300 Sobic004G144800--Sobic002G097300 Sobic005G000900 Sobic005G000900 Sobic004G144800--Sobic005G000900 Sobic002G156400 Sobic002G156400 Sobic004G144800--Sobic002G156400 Sobic001G143700 Sobic001G143700 Sobic004G144800--Sobic001G143700 Sobic008G156600--Sobic009G163100 Sobic008G156600--Sobic005G050400 Sobic008G156600--Sobic001G072000 Sobic008G156600--Sobic001G112600 Sobic008G156600--Sobic005G020600 Sobic008G156600--Sobic008G171900 Sobic004G241300 Sobic004G241300 Sobic008G156600--Sobic004G241300 Sobic004G007400 Sobic004G007400 Sobic008G156600--Sobic004G007400 Sobic008G156600--Sobic001G322400
Octagon: transcription factors


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