Gene annotation
Transcriptome id Sobic.010G278800.2,Sobic.010G278800.1
Synonym Sb10g031230
Functional annotation PSP domain containing protein, expressed
UniProt A0A1W0VV68 , C5Z2N0
Pfam PF04046 PF04037
Panther DB PTHR12785 PTHR12785:SF8
NCBI CDD KOG2330; Splicing factor 3b, subunit 2
KEGG Orthology K12829; SF3B2, SAP145, splicing factor 3B subunit 2
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT4G21660 : proline-rich spliceosome-associated (PSP) family protein
RAP-DB (Rice) LOC_Os02g58090.1 : PSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041665 , Zm00025a018591
Brachypodium -
Barley -
Wheat TraesCS6A02G411000 , TraesCS6A02G411000 , TraesCS6B02G456800 , TraesCS6B02G456800 , TraesCS6D02G393900 , TraesCS6D02G393900
Populus -


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cDNA sequences
Sobic.010G278800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G137200 ZOS9-21 - C2H2 zinc finger protein, expressed -
2 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
3 Sobic.007G146100 formin, putative, expressed -
4 Sobic.004G351600 expressed protein K18734: protein SMG8
5 Sobic.002G344000 expressed protein -
6 Sobic.010G121500 expressed protein K11267: sister chromatid cohesion protein PDS5
7 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
8 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
9 Sobic.010G010700 PHD-finger family protein, expressed -
10 Sobic.002G068100 aminoacyl-tRNA synthetase, putative, expressed -
11 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
12 Sobic.001G536400 THO complex subunit 1, putative, expressed K12878: THO complex subunit 1
13 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
14 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
15 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
16 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
17 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
18 Sobic.010G148932 - -
19 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
20 Sobic.001G100900 OsDegp14 - Putative Deg protease homologue, expressed -


Gene co-expression network
sample Sobic010G278800 Sobic010G278800 Sobic002G137200 Sobic002G137200 Sobic010G278800--Sobic002G137200 Sobic001G354600 Sobic001G354600 Sobic010G278800--Sobic001G354600 Sobic007G146100 Sobic007G146100 Sobic010G278800--Sobic007G146100 Sobic004G351600 Sobic004G351600 Sobic010G278800--Sobic004G351600 Sobic002G344000 Sobic002G344000 Sobic010G278800--Sobic002G344000 Sobic010G121500 Sobic010G121500 Sobic010G278800--Sobic010G121500 Sobic002G411600 Sobic002G411600 Sobic010G278800--Sobic002G411600 Sobic004G174200 Sobic004G174200 Sobic010G278800--Sobic004G174200 Sobic010G010700 Sobic010G010700 Sobic010G278800--Sobic010G010700 Sobic009G088000 Sobic009G088000 Sobic002G137200--Sobic009G088000 Sobic002G137200--Sobic001G354600 Sobic008G002500 Sobic008G002500 Sobic002G137200--Sobic008G002500 Sobic002G068100 Sobic002G068100 Sobic002G137200--Sobic002G068100 Sobic001G522600 Sobic001G522600 Sobic002G137200--Sobic001G522600 Sobic004G048800 Sobic004G048800 Sobic002G137200--Sobic004G048800 Sobic002G137200--Sobic010G278800 Sobic002G126300 Sobic002G126300 Sobic002G137200--Sobic002G126300 Sobic002G137200--Sobic007G146100 Sobic003G360400 Sobic003G360400 Sobic001G354600--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic001G354600--Sobic010G112100 Sobic001G433800 Sobic001G433800 Sobic001G354600--Sobic001G433800 Sobic001G354600--Sobic004G048800 Sobic007G105100 Sobic007G105100 Sobic001G354600--Sobic007G105100 Sobic002G133300 Sobic002G133300 Sobic001G354600--Sobic002G133300 Sobic001G063700 Sobic001G063700 Sobic001G354600--Sobic001G063700 Sobic001G354600--Sobic002G068100 Sobic009G044800 Sobic009G044800 Sobic001G354600--Sobic009G044800 Sobic005G100700 Sobic005G100700 Sobic007G146100--Sobic005G100700 Sobic004G040350 Sobic004G040350 Sobic007G146100--Sobic004G040350 Sobic007G146100--Sobic008G002500 Sobic007G146100--Sobic002G344000 Sobic008G001200 Sobic008G001200 Sobic007G146100--Sobic008G001200 Sobic007G146100--Sobic001G354600 Sobic007G146100--Sobic003G360400 Sobic007G146100--Sobic001G063700 Sobic007G063000 Sobic007G063000 Sobic007G146100--Sobic007G063000 Sobic009G256400 Sobic009G256400 Sobic004G351600--Sobic009G256400 Sobic004G351600--Sobic007G063000 Sobic003G166750 Sobic003G166750 Sobic004G351600--Sobic003G166750 Sobic002G042600 Sobic002G042600 Sobic004G351600--Sobic002G042600 Sobic003G095900 Sobic003G095900 Sobic004G351600--Sobic003G095900 Sobic004G276400 Sobic004G276400 Sobic004G351600--Sobic004G276400 Sobic004G351600--Sobic002G133300 Sobic009G165700 Sobic009G165700 Sobic004G351600--Sobic009G165700 Sobic001G370900 Sobic001G370900 Sobic004G351600--Sobic001G370900 Sobic002G344000--Sobic005G100700 Sobic008G044100 Sobic008G044100 Sobic002G344000--Sobic008G044100 Sobic002G344000--Sobic003G360400 Sobic002G211800 Sobic002G211800 Sobic002G344000--Sobic002G211800 Sobic001G230000 Sobic001G230000 Sobic002G344000--Sobic001G230000 Sobic008G113100 Sobic008G113100 Sobic002G344000--Sobic008G113100 Sobic003G398700 Sobic003G398700 Sobic002G344000--Sobic003G398700 Sobic002G344000--Sobic001G354600 Sobic010G206900 Sobic010G206900 Sobic002G344000--Sobic010G206900 Sobic004G223000 Sobic004G223000 Sobic010G121500--Sobic004G223000 Sobic010G121500--Sobic010G206900 Sobic003G241800 Sobic003G241800 Sobic010G121500--Sobic003G241800 Sobic010G121500--Sobic001G230000 Sobic003G389200 Sobic003G389200 Sobic010G121500--Sobic003G389200 Sobic007G062800 Sobic007G062800 Sobic010G121500--Sobic007G062800 Sobic001G174900 Sobic001G174900 Sobic010G121500--Sobic001G174900 Sobic010G121500--Sobic010G010700 Sobic001G454500 Sobic001G454500 Sobic010G121500--Sobic001G454500 Sobic009G191000 Sobic009G191000 Sobic002G411600--Sobic009G191000 Sobic003G422500 Sobic003G422500 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic002G411600--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic002G411600--Sobic004G034900 Sobic002G411600--Sobic004G174200 Sobic010G247800 Sobic010G247800 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic004G291900 Sobic004G291900 Sobic004G174200--Sobic004G291900 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic004G174200--Sobic010G206900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic005G001000 Sobic005G001000 Sobic004G174200--Sobic005G001000 Sobic004G174200--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic004G174200--Sobic001G194200 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic005G112300 Sobic005G112300 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000
Octagon: transcription factors


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