Gene annotation
Transcriptome id Sobic.001G022600.2,Sobic.001G022600.1
Synonym Sb01g002150, ATRZ-1A
Functional annotation glycine-rich RNA-binding protein 7, putative, expressed
UniProt A0A1B6QGY8
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology K12885; RBMX, heterogeneous nuclear ribonucleoprotein G
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G26420 : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
RAP-DB (Rice) LOC_Os03g61990.2,LOC_Os03g61990.1 : glycine-rich RNA-binding protein 7, putative, expressed
MaizeGDB (Corn) Zm00025a008944
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G022600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190800 thioredoxin, putative, expressed K03671: thioredoxin 1
2 Sobic.004G214100 transporter family protein, putative, expressed K15281: solute carrier family 35
3 Sobic.002G193400 lipase, putative, expressed K18875: enhanced disease susceptibility 1 protein
4 Sobic.008G142600 amino acid permease family protein, putative, expressed -
5 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
6 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
7 Sobic.004G174100 expressed protein -
8 Sobic.001G427700 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
9 Sobic.003G359900 C2 domain containing protein, expressed -
10 Sobic.003G261900 expressed protein -
11 Sobic.007G168200 peptidyl-prolyl cis-trans isomerase, putative, expressed K12733: peptidyl-prolyl cis-trans isomerase-like 1
12 Sobic.001G416300 expressed protein -
13 Sobic.005G093400 expressed protein -
14 Sobic.005G064800 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
15 Sobic.001G075000 lectin-like receptor kinase, putative, expressed -
16 Sobic.001G261597 - K07904: Ras-related protein Rab-11A
17 Sobic.003G296300 WRKY13, expressed -
18 Sobic.006G127400 inactive receptor kinase At1g27190 precursor, putative, expressed -
19 Sobic.005G000100 monoglyceride lipase, putative, expressed -
20 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -


Gene co-expression network
sample Sobic001G022600 Sobic001G022600 Sobic009G190800 Sobic009G190800 Sobic001G022600--Sobic009G190800 Sobic004G214100 Sobic004G214100 Sobic001G022600--Sobic004G214100 Sobic002G193400 Sobic002G193400 Sobic001G022600--Sobic002G193400 Sobic008G142600 Sobic008G142600 Sobic001G022600--Sobic008G142600 Sobic002G117200 Sobic002G117200 Sobic001G022600--Sobic002G117200 Sobic001G427500 Sobic001G427500 Sobic001G022600--Sobic001G427500 Sobic004G174100 Sobic004G174100 Sobic001G022600--Sobic004G174100 Sobic001G427700 Sobic001G427700 Sobic001G022600--Sobic001G427700 Sobic003G359900 Sobic003G359900 Sobic001G022600--Sobic003G359900 Sobic001G341800 Sobic001G341800 Sobic009G190800--Sobic001G341800 Sobic009G190800--Sobic001G022600 Sobic009G190800--Sobic003G359900 Sobic003G103200 Sobic003G103200 Sobic009G190800--Sobic003G103200 Sobic009G190800--Sobic004G214100 Sobic002G281800 Sobic002G281800 Sobic009G190800--Sobic002G281800 Sobic005G072200 Sobic005G072200 Sobic009G190800--Sobic005G072200 Sobic001G416300 Sobic001G416300 Sobic009G190800--Sobic001G416300 Sobic007G168200 Sobic007G168200 Sobic009G190800--Sobic007G168200 Sobic004G214100--Sobic001G022600 Sobic004G227300 Sobic004G227300 Sobic004G214100--Sobic004G227300 Sobic004G214100--Sobic009G190800 Sobic001G261597 Sobic001G261597 Sobic004G214100--Sobic001G261597 Sobic004G214100--Sobic003G359900 Sobic006G269000 Sobic006G269000 Sobic004G214100--Sobic006G269000 Sobic004G214100--Sobic007G168200 Sobic004G214100--Sobic001G427500 Sobic010G009400 Sobic010G009400 Sobic004G214100--Sobic010G009400 Sobic002G193400--Sobic001G427500 Sobic002G193400--Sobic001G022600 Sobic002G339500 Sobic002G339500 Sobic002G193400--Sobic002G339500 Sobic003G402200 Sobic003G402200 Sobic002G193400--Sobic003G402200 Sobic006G127400 Sobic006G127400 Sobic002G193400--Sobic006G127400 Sobic002G193400--Sobic009G190800 Sobic002G193400--Sobic005G072200 Sobic001G075000 Sobic001G075000 Sobic002G193400--Sobic001G075000 Sobic006G052200 Sobic006G052200 Sobic002G193400--Sobic006G052200 Sobic008G142600--Sobic001G427700 Sobic002G271600 Sobic002G271600 Sobic008G142600--Sobic002G271600 Sobic008G142600--Sobic003G402200 Sobic001G321600 Sobic001G321600 Sobic008G142600--Sobic001G321600 Sobic008G142600--Sobic001G022600 Sobic008G142600--Sobic001G416300 Sobic008G111300 Sobic008G111300 Sobic008G142600--Sobic008G111300 Sobic002G366100 Sobic002G366100 Sobic008G142600--Sobic002G366100 Sobic008G142600--Sobic009G190800 Sobic009G156300 Sobic009G156300 Sobic002G117200--Sobic009G156300 Sobic004G352900 Sobic004G352900 Sobic002G117200--Sobic004G352900 Sobic003G003000 Sobic003G003000 Sobic002G117200--Sobic003G003000 Sobic001G285000 Sobic001G285000 Sobic002G117200--Sobic001G285000 Sobic009G131100 Sobic009G131100 Sobic002G117200--Sobic009G131100 Sobic002G123200 Sobic002G123200 Sobic002G117200--Sobic002G123200 Sobic002G117200--Sobic001G022600 Sobic004G060600 Sobic004G060600 Sobic002G117200--Sobic004G060600 Sobic009G080200 Sobic009G080200 Sobic002G117200--Sobic009G080200 Sobic001G427500--Sobic002G339500 Sobic001G427500--Sobic002G193400 Sobic001G427500--Sobic004G227300 Sobic006G004600 Sobic006G004600 Sobic001G427500--Sobic006G004600 Sobic007G062500 Sobic007G062500 Sobic001G427500--Sobic007G062500 Sobic001G417900 Sobic001G417900 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G427500--Sobic001G261597 Sobic001G427500--Sobic001G022600 Sobic001G427200 Sobic001G427200 Sobic004G174100--Sobic001G427200 Sobic006G242000 Sobic006G242000 Sobic004G174100--Sobic006G242000 Sobic002G130700 Sobic002G130700 Sobic004G174100--Sobic002G130700 Sobic005G064800 Sobic005G064800 Sobic004G174100--Sobic005G064800 Sobic004G174100--Sobic001G022600 Sobic004G174100--Sobic002G193400 Sobic004G174100--Sobic008G142600 Sobic004G293000 Sobic004G293000 Sobic004G174100--Sobic004G293000 Sobic004G253900 Sobic004G253900 Sobic004G174100--Sobic004G253900 Sobic001G427700--Sobic008G142600 Sobic001G427700--Sobic003G402200 Sobic004G018400 Sobic004G018400 Sobic001G427700--Sobic004G018400 Sobic001G320700 Sobic001G320700 Sobic001G427700--Sobic001G320700 Sobic001G427700--Sobic001G416300 Sobic003G213900 Sobic003G213900 Sobic001G427700--Sobic003G213900 Sobic001G315800 Sobic001G315800 Sobic001G427700--Sobic001G315800 Sobic004G217700 Sobic004G217700 Sobic001G427700--Sobic004G217700 Sobic010G214200 Sobic010G214200 Sobic001G427700--Sobic010G214200 Sobic003G359900--Sobic005G072200 Sobic003G359900--Sobic009G190800 Sobic003G359900--Sobic004G227300 Sobic003G359900--Sobic001G261597 Sobic009G205600 Sobic009G205600 Sobic003G359900--Sobic009G205600 Sobic003G359900--Sobic004G214100 Sobic003G261900 Sobic003G261900 Sobic003G359900--Sobic003G261900 Sobic006G065900 Sobic006G065900 Sobic003G359900--Sobic006G065900 Sobic003G359900--Sobic002G271600
Octagon: transcription factors


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