Gene annotation
Transcriptome id Sobic.001G025500.2,Sobic.001G025500.1,Sobic.001G025500.3
Synonym AtCRT1a, CRT1, Sb01g002430, CRT1a
Functional annotation calreticulin precursor, putative, expressed
UniProt A0A1B6QGZ8 , A0A1B6QH35
Pfam PF00262
Panther DB PTHR11073 PTHR11073:SF17
NCBI CDD KOG0674; Calreticulin
KEGG Orthology K08057; calreticulin
Gene Ontology GO:0006457; protein folding GO:0005783endoplasmic reticulum GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G56340 : calreticulin 1a
RAP-DB (Rice) LOC_Os03g61670.1 : calreticulin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045502 , Zm00025a013606
Brachypodium KQK02438 , KQK12323
Barley HORVU2Hr1G121990.8 , HORVU2Hr1G121990.4 , HORVU2Hr1G121990.5 , HORVU2Hr1G121990.6 , HORVU2Hr1G121990.7 , HORVU2Hr1G121990.1 , HORVU2Hr1G121990.2 , HORVU2Hr1G121990.3 , HORVU5Hr1G116590.5 , HORVU5Hr1G116590.4 , HORVU5Hr1G116590.1 , HORVU2Hr1G121990.9 , HORVU5Hr1G116590.3 , HORVU5Hr1G116590.2 , HORVU2Hr1G121990.10
Wheat TraesCS2B02G576100 , TraesCS2B02G576100 , TraesCS5B02G509400 , TraesCS5B02G510200 , TraesCS2D02G546500 , TraesCS2D02G546500 , TraesCS2D02G546500 , TraesCS4A02G364000 , TraesCS5B02G509400 , TraesCS2B02G576100 , TraesCS2A02G545600 , TraesCS2A02G545600 , TraesCS2A02G545600
Populus PNT06044


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cDNA sequences
Sobic.001G025500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G298200 Plant VAMP (vesicle-associated membrane protein) family protein(PubMedID : 26465154)@MSP domain containing protein, expressed -
2 Sobic.008G054700 growth regulator related protein, putative, expressed -
3 Sobic.009G229400 60S acidic ribosomal protein P0, putative, expressed K02941: RP-LP0, large subunit ribosomal protein LP0
4 Sobic.002G087200 OsFBX231 - F-box domain containing protein, expressed -
5 Sobic.003G065201 - -
6 Sobic.010G182000 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
7 Sobic.009G148600 DUF803 domain containing, putative, expressed -
8 Sobic.002G420100 glycosyl transferase, family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
9 Sobic.009G242600 ATPCME, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
10 Sobic.009G087100 cyclin-A1, putative, expressed K06627: cyclin-A
11 Sobic.001G387300 exostosin family domain containing protein, expressed -
12 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
13 Sobic.006G265800 OsFBX154 - F-box domain containing protein, expressed -
14 Sobic.004G046800 expressed protein -
15 Sobic.005G050400 syntaxin 6, putative, expressed -
16 Sobic.001G194800 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
17 Sobic.005G136100 - -
18 Sobic.010G038300 OsFBDUF33 - F-box and DUF domain containing protein, expressed -
19 Sobic.005G174750 - -
20 Sobic.010G027100 expressed protein -


Gene co-expression network
sample Sobic001G025500 Sobic001G025500 Sobic004G298200 Sobic004G298200 Sobic001G025500--Sobic004G298200 Sobic008G054700 Sobic008G054700 Sobic001G025500--Sobic008G054700 Sobic009G229400 Sobic009G229400 Sobic001G025500--Sobic009G229400 Sobic002G087200 Sobic002G087200 Sobic001G025500--Sobic002G087200 Sobic003G065201 Sobic003G065201 Sobic001G025500--Sobic003G065201 Sobic010G182000 Sobic010G182000 Sobic001G025500--Sobic010G182000 Sobic009G148600 Sobic009G148600 Sobic001G025500--Sobic009G148600 Sobic002G420100 Sobic002G420100 Sobic001G025500--Sobic002G420100 Sobic009G242600 Sobic009G242600 Sobic001G025500--Sobic009G242600 Sobic001G194800 Sobic001G194800 Sobic004G298200--Sobic001G194800 Sobic001G112600 Sobic001G112600 Sobic004G298200--Sobic001G112600 Sobic006G115700 Sobic006G115700 Sobic004G298200--Sobic006G115700 Sobic002G364700 Sobic002G364700 Sobic004G298200--Sobic002G364700 Sobic003G244400 Sobic003G244400 Sobic004G298200--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic004G298200--Sobic008G055200 Sobic005G050400 Sobic005G050400 Sobic004G298200--Sobic005G050400 Sobic002G192800 Sobic002G192800 Sobic004G298200--Sobic002G192800 Sobic010G253600 Sobic010G253600 Sobic004G298200--Sobic010G253600 Sobic006G265800 Sobic006G265800 Sobic008G054700--Sobic006G265800 Sobic004G145701 Sobic004G145701 Sobic008G054700--Sobic004G145701 Sobic008G030501 Sobic008G030501 Sobic008G054700--Sobic008G030501 Sobic008G054700--Sobic003G244400 Sobic004G046800 Sobic004G046800 Sobic008G054700--Sobic004G046800 Sobic001G384200 Sobic001G384200 Sobic008G054700--Sobic001G384200 Sobic008G124600 Sobic008G124600 Sobic008G054700--Sobic008G124600 Sobic004G057300 Sobic004G057300 Sobic008G054700--Sobic004G057300 Sobic001G400000 Sobic001G400000 Sobic008G054700--Sobic001G400000 Sobic008G029800 Sobic008G029800 Sobic009G229400--Sobic008G029800 Sobic010G266600 Sobic010G266600 Sobic009G229400--Sobic010G266600 Sobic010G038300 Sobic010G038300 Sobic009G229400--Sobic010G038300 Sobic009G229400--Sobic002G192800 Sobic006G204400 Sobic006G204400 Sobic009G229400--Sobic006G204400 Sobic008G071800 Sobic008G071800 Sobic009G229400--Sobic008G071800 Sobic005G174750 Sobic005G174750 Sobic009G229400--Sobic005G174750 Sobic006G070032 Sobic006G070032 Sobic009G229400--Sobic006G070032 Sobic002G060101 Sobic002G060101 Sobic009G229400--Sobic002G060101 Sobic002G087200--Sobic001G112600 Sobic001G072000 Sobic001G072000 Sobic002G087200--Sobic001G072000 Sobic003G005700 Sobic003G005700 Sobic002G087200--Sobic003G005700 Sobic002G097200 Sobic002G097200 Sobic002G087200--Sobic002G097200 Sobic002G087200--Sobic005G050400 Sobic009G242200 Sobic009G242200 Sobic002G087200--Sobic009G242200 Sobic002G087200--Sobic006G115700 Sobic008G156600 Sobic008G156600 Sobic002G087200--Sobic008G156600 Sobic001G432200 Sobic001G432200 Sobic002G087200--Sobic001G432200 Sobic001G539400 Sobic001G539400 Sobic003G065201--Sobic001G539400 Sobic008G050200 Sobic008G050200 Sobic003G065201--Sobic008G050200 Sobic003G065201--Sobic006G204400 Sobic003G065201--Sobic009G229400 Sobic010G027100 Sobic010G027100 Sobic003G065201--Sobic010G027100 Sobic008G007700 Sobic008G007700 Sobic003G065201--Sobic008G007700 Sobic002G074800 Sobic002G074800 Sobic003G065201--Sobic002G074800 Sobic009G252200 Sobic009G252200 Sobic003G065201--Sobic009G252200 Sobic002G180800 Sobic002G180800 Sobic003G065201--Sobic002G180800 Sobic010G182000--Sobic002G420100 Sobic003G423700 Sobic003G423700 Sobic010G182000--Sobic003G423700 Sobic010G182000--Sobic008G156600 Sobic008G104000 Sobic008G104000 Sobic010G182000--Sobic008G104000 Sobic010G182000--Sobic001G072000 Sobic009G163100 Sobic009G163100 Sobic010G182000--Sobic009G163100 Sobic010G182000--Sobic001G400000 Sobic002G172401 Sobic002G172401 Sobic010G182000--Sobic002G172401 Sobic010G182000--Sobic005G050400 Sobic006G193400 Sobic006G193400 Sobic009G148600--Sobic006G193400 Sobic009G148600--Sobic004G298200 Sobic007G212500 Sobic007G212500 Sobic009G148600--Sobic007G212500 Sobic003G024400 Sobic003G024400 Sobic009G148600--Sobic003G024400 Sobic009G148600--Sobic003G244400 Sobic009G148600--Sobic002G192800 Sobic009G148600--Sobic006G204400 Sobic009G178400 Sobic009G178400 Sobic009G148600--Sobic009G178400 Sobic006G143900 Sobic006G143900 Sobic009G148600--Sobic006G143900 Sobic010G253200 Sobic010G253200 Sobic002G420100--Sobic010G253200 Sobic002G420100--Sobic010G182000 Sobic004G241300 Sobic004G241300 Sobic002G420100--Sobic004G241300 Sobic002G420100--Sobic003G423700 Sobic002G420100--Sobic008G156600 Sobic003G293400 Sobic003G293400 Sobic002G420100--Sobic003G293400 Sobic001G131900 Sobic001G131900 Sobic002G420100--Sobic001G131900 Sobic002G420100--Sobic001G400000 Sobic002G420100--Sobic008G104000 Sobic006G204500 Sobic006G204500 Sobic009G242600--Sobic006G204500 Sobic010G003200 Sobic010G003200 Sobic009G242600--Sobic010G003200 Sobic009G242600--Sobic002G364700 Sobic009G242600--Sobic001G432200 Sobic003G024100 Sobic003G024100 Sobic009G242600--Sobic003G024100 Sobic004G273600 Sobic004G273600 Sobic009G242600--Sobic004G273600 Sobic009G061500 Sobic009G061500 Sobic009G242600--Sobic009G061500 Sobic001G240600 Sobic001G240600 Sobic009G242600--Sobic001G240600 Sobic001G142501 Sobic001G142501 Sobic009G242600--Sobic001G142501
Octagon: transcription factors


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