Gene annotation
Transcriptome id Sobic.001G092100.1
Synonym Sb01g008300
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1B6QI26
Pfam PF08614 PF00400
Panther DB PTHR19878
NCBI CDD KOG0288; WD40 repeat protein TipD
KEGG Orthology K17890; autophagy-related protein 16-1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G50230 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g53510.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008128
Brachypodium KQK13241
Barley HORVU5Hr1G094540.9 , HORVU5Hr1G094540.8 , HORVU5Hr1G094540.7 , HORVU5Hr1G094540.4 , HORVU5Hr1G094540.3 , HORVU5Hr1G094540.2 , HORVU5Hr1G094540.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
2 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
3 Sobic.010G058900 BSD domain containing protein, expressed -
4 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
5 Sobic.003G420700 expressed protein -
6 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
8 Sobic.003G146900 lipase class 3 family protein, putative, expressed -
9 Sobic.003G005200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
10 Sobic.009G054700 macrophage erythroblast attacher, putative, expressed K18624: MAEA, macrophage erythroblast attacher
11 Sobic.001G124300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G395801 - -
13 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
14 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
15 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G366900 receptor-like protein kinase precursor, putative, expressed -
17 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
18 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
19 Sobic.009G198100 expressed protein -
20 Sobic.006G252700 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G092100 Sobic001G092100 Sobic010G018700 Sobic010G018700 Sobic001G092100--Sobic010G018700 Sobic004G013600 Sobic004G013600 Sobic001G092100--Sobic004G013600 Sobic010G058900 Sobic010G058900 Sobic001G092100--Sobic010G058900 Sobic002G084300 Sobic002G084300 Sobic001G092100--Sobic002G084300 Sobic003G420700 Sobic003G420700 Sobic001G092100--Sobic003G420700 Sobic002G256300 Sobic002G256300 Sobic001G092100--Sobic002G256300 Sobic009G216000 Sobic009G216000 Sobic001G092100--Sobic009G216000 Sobic003G146900 Sobic003G146900 Sobic001G092100--Sobic003G146900 Sobic003G005200 Sobic003G005200 Sobic001G092100--Sobic003G005200 Sobic001G356600 Sobic001G356600 Sobic010G018700--Sobic001G356600 Sobic009G179700 Sobic009G179700 Sobic010G018700--Sobic009G179700 Sobic010G027600 Sobic010G027600 Sobic010G018700--Sobic010G027600 Sobic004G104900 Sobic004G104900 Sobic010G018700--Sobic004G104900 Sobic003G439800 Sobic003G439800 Sobic010G018700--Sobic003G439800 Sobic009G058500 Sobic009G058500 Sobic010G018700--Sobic009G058500 Sobic004G141700 Sobic004G141700 Sobic010G018700--Sobic004G141700 Sobic010G193800 Sobic010G193800 Sobic010G018700--Sobic010G193800 Sobic004G066200 Sobic004G066200 Sobic010G018700--Sobic004G066200 Sobic001G056200 Sobic001G056200 Sobic004G013600--Sobic001G056200 Sobic001G028400 Sobic001G028400 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic010G211300 Sobic010G211300 Sobic004G013600--Sobic010G211300 Sobic006G248500 Sobic006G248500 Sobic004G013600--Sobic006G248500 Sobic007G205000 Sobic007G205000 Sobic004G013600--Sobic007G205000 Sobic009G030300 Sobic009G030300 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic004G013600--Sobic007G118200 Sobic010G058900--Sobic002G256300 Sobic010G058900--Sobic002G084300 Sobic010G058900--Sobic004G104900 Sobic009G198100 Sobic009G198100 Sobic010G058900--Sobic009G198100 Sobic009G054700 Sobic009G054700 Sobic010G058900--Sobic009G054700 Sobic010G058900--Sobic001G028400 Sobic010G168600 Sobic010G168600 Sobic010G058900--Sobic010G168600 Sobic010G058900--Sobic007G118200 Sobic001G083600 Sobic001G083600 Sobic010G058900--Sobic001G083600 Sobic002G084300--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic002G084300--Sobic004G263900 Sobic008G174300 Sobic008G174300 Sobic002G084300--Sobic008G174300 Sobic002G378200 Sobic002G378200 Sobic002G084300--Sobic002G378200 Sobic002G084300--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic002G084300--Sobic001G408700 Sobic001G390500 Sobic001G390500 Sobic002G084300--Sobic001G390500 Sobic003G081000 Sobic003G081000 Sobic002G084300--Sobic003G081000 Sobic002G084300--Sobic009G198100 Sobic003G420700--Sobic010G193800 Sobic001G038100 Sobic001G038100 Sobic003G420700--Sobic001G038100 Sobic002G077900 Sobic002G077900 Sobic003G420700--Sobic002G077900 Sobic001G309100 Sobic001G309100 Sobic003G420700--Sobic001G309100 Sobic001G285300 Sobic001G285300 Sobic003G420700--Sobic001G285300 Sobic007G117100 Sobic007G117100 Sobic003G420700--Sobic007G117100 Sobic002G014700 Sobic002G014700 Sobic003G420700--Sobic002G014700 Sobic009G036900 Sobic009G036900 Sobic003G420700--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic003G420700--Sobic003G024800 Sobic009G246950 Sobic009G246950 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic003G433500 Sobic003G433500 Sobic009G216000--Sobic003G433500 Sobic003G355000 Sobic003G355000 Sobic009G216000--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic009G216000--Sobic002G045400 Sobic005G030300 Sobic005G030300 Sobic009G216000--Sobic005G030300 Sobic001G371000 Sobic001G371000 Sobic009G216000--Sobic001G371000 Sobic009G216000--Sobic004G013600 Sobic009G216000--Sobic009G198100 Sobic002G362300 Sobic002G362300 Sobic009G216000--Sobic002G362300 Sobic006G261100 Sobic006G261100 Sobic009G216000--Sobic006G261100 Sobic010G067700 Sobic010G067700 Sobic003G146900--Sobic010G067700 Sobic003G146900--Sobic003G355000 Sobic003G146900--Sobic009G216000 Sobic002G314900 Sobic002G314900 Sobic003G146900--Sobic002G314900 Sobic004G349800 Sobic004G349800 Sobic003G146900--Sobic004G349800 Sobic010G095700 Sobic010G095700 Sobic003G146900--Sobic010G095700 Sobic008G128600 Sobic008G128600 Sobic003G146900--Sobic008G128600 Sobic003G146900--Sobic006G261100 Sobic001G473600 Sobic001G473600 Sobic003G146900--Sobic001G473600 Sobic002G300700 Sobic002G300700 Sobic003G005200--Sobic002G300700 Sobic009G160600 Sobic009G160600 Sobic003G005200--Sobic009G160600 Sobic001G360200 Sobic001G360200 Sobic003G005200--Sobic001G360200 Sobic006G225300 Sobic006G225300 Sobic003G005200--Sobic006G225300 Sobic002G281300 Sobic002G281300 Sobic003G005200--Sobic002G281300 Sobic004G091200 Sobic004G091200 Sobic003G005200--Sobic004G091200 Sobic003G038600 Sobic003G038600 Sobic003G005200--Sobic003G038600 Sobic003G021200 Sobic003G021200 Sobic003G005200--Sobic003G021200 Sobic003G005200--Sobic009G058500
Octagon: transcription factors


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