Gene annotation
Transcriptome id Sobic.001G105700.2,Sobic.001G105700.1
Synonym
Functional annotation GTPase of unknown function domain containing protein, putative, expressed
UniProt A0A1B6QIB0
Pfam PF13167 PF01926 PF16360
Panther DB PTHR10229 PTHR10229:SF0
NCBI CDD KOG0410; Predicted GTP binding protein
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT3G49725 : GTP-binding protein, HflX
RAP-DB (Rice) LOC_Os03g51790.1 : GTPase of unknown function domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007985 , Zm00025a037346
Brachypodium KQK13414 , PNT74203 , PNT74202
Barley -
Wheat TraesCS4A02G256300 , TraesCS4B02G058400 , TraesCS4D02G058300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
2 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
3 Sobic.004G005100 peptidase family C78 domain containing protein, expressed -
4 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
6 Sobic.005G162500 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
7 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
8 Sobic.004G334300 ATMAK10, putative, expressed -
9 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
10 Sobic.003G375200 mitotic checkpoint family protein, putative, expressed -
11 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
12 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
13 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
14 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
15 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
16 Sobic.001G214600 expressed protein -
17 Sobic.002G429300 importin subunit beta, putative, expressed -
18 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
19 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
20 Sobic.010G105200 SYD, putative, expressed -


Gene co-expression network
sample Sobic001G105700 Sobic001G105700 Sobic004G248600 Sobic004G248600 Sobic001G105700--Sobic004G248600 Sobic010G080700 Sobic010G080700 Sobic001G105700--Sobic010G080700 Sobic004G005100 Sobic004G005100 Sobic001G105700--Sobic004G005100 Sobic003G186000 Sobic003G186000 Sobic001G105700--Sobic003G186000 Sobic006G040500 Sobic006G040500 Sobic001G105700--Sobic006G040500 Sobic005G162500 Sobic005G162500 Sobic001G105700--Sobic005G162500 Sobic003G312100 Sobic003G312100 Sobic001G105700--Sobic003G312100 Sobic004G334300 Sobic004G334300 Sobic001G105700--Sobic004G334300 Sobic002G133300 Sobic002G133300 Sobic001G105700--Sobic002G133300 Sobic009G109200 Sobic009G109200 Sobic004G248600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic004G248600--Sobic001G004400 Sobic004G248600--Sobic002G133300 Sobic003G072200 Sobic003G072200 Sobic004G248600--Sobic003G072200 Sobic004G248600--Sobic003G312100 Sobic004G248600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic004G248600--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic004G248600--Sobic002G397500 Sobic004G248600--Sobic005G162500 Sobic003G375200 Sobic003G375200 Sobic010G080700--Sobic003G375200 Sobic003G221400 Sobic003G221400 Sobic010G080700--Sobic003G221400 Sobic010G080700--Sobic005G162500 Sobic002G179400 Sobic002G179400 Sobic010G080700--Sobic002G179400 Sobic010G059500 Sobic010G059500 Sobic010G080700--Sobic010G059500 Sobic001G089600 Sobic001G089600 Sobic010G080700--Sobic001G089600 Sobic008G124800 Sobic008G124800 Sobic010G080700--Sobic008G124800 Sobic004G322400 Sobic004G322400 Sobic010G080700--Sobic004G322400 Sobic004G131300 Sobic004G131300 Sobic010G080700--Sobic004G131300 Sobic004G005100--Sobic003G312100 Sobic004G005100--Sobic010G080700 Sobic001G291000 Sobic001G291000 Sobic004G005100--Sobic001G291000 Sobic004G005100--Sobic006G040500 Sobic008G088872 Sobic008G088872 Sobic004G005100--Sobic008G088872 Sobic010G148932 Sobic010G148932 Sobic004G005100--Sobic010G148932 Sobic004G135400 Sobic004G135400 Sobic004G005100--Sobic004G135400 Sobic010G034000 Sobic010G034000 Sobic004G005100--Sobic010G034000 Sobic004G005100--Sobic004G248600 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic010G010700 Sobic010G010700 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic003G186000--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic003G186000--Sobic007G062800 Sobic008G001200 Sobic008G001200 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic006G040500--Sobic003G186000 Sobic006G040500--Sobic005G001000 Sobic006G040500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic006G040500--Sobic005G112300 Sobic006G040500--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic006G040500--Sobic002G008900 Sobic009G256400 Sobic009G256400 Sobic006G040500--Sobic009G256400 Sobic010G123600 Sobic010G123600 Sobic006G040500--Sobic010G123600 Sobic006G040500--Sobic004G276400 Sobic001G493700 Sobic001G493700 Sobic005G162500--Sobic001G493700 Sobic002G429300 Sobic002G429300 Sobic005G162500--Sobic002G429300 Sobic001G370900 Sobic001G370900 Sobic005G162500--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic005G162500--Sobic009G131300 Sobic005G162500--Sobic008G088872 Sobic005G162500--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic005G162500--Sobic008G098900 Sobic005G162500--Sobic004G276400 Sobic002G335600 Sobic002G335600 Sobic005G162500--Sobic002G335600 Sobic003G312100--Sobic010G148932 Sobic003G233400 Sobic003G233400 Sobic003G312100--Sobic003G233400 Sobic001G137000 Sobic001G137000 Sobic003G312100--Sobic001G137000 Sobic007G019300 Sobic007G019300 Sobic003G312100--Sobic007G019300 Sobic003G312100--Sobic003G072200 Sobic003G312100--Sobic002G397500 Sobic003G312100--Sobic001G004400 Sobic003G312100--Sobic004G248600 Sobic002G396500 Sobic002G396500 Sobic003G312100--Sobic002G396500 Sobic004G334300--Sobic003G186000 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic004G334300--Sobic006G040500 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic004G334300--Sobic005G162500 Sobic004G244900 Sobic004G244900 Sobic004G334300--Sobic004G244900 Sobic004G334300--Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic001G433800 Sobic001G433800 Sobic002G133300--Sobic001G433800 Sobic002G133300--Sobic001G004400 Sobic001G289800 Sobic001G289800 Sobic002G133300--Sobic001G289800 Sobic002G133300--Sobic003G072200 Sobic002G133300--Sobic002G397500 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic002G133300--Sobic001G493700
Octagon: transcription factors


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