Gene annotation
Transcriptome id Sobic.001G148101.1
Synonym -
Functional annotation -
UniProt A0A1Z5S5N3
Pfam PF00352
Panther DB PTHR10126 PTHR10126:SF23
NCBI CDD KOG3302; TATA-box binding protein (TBP), component of TFIID and TFIIIB
KEGG Orthology -
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G55520 : TATA binding protein 2
RAP-DB (Rice) LOC_Os12g39070.1 : TATA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a017201 , Zm00025a007551
Brachypodium KQK13894
Barley HORVU4Hr1G002400.12 , HORVU4Hr1G002400.13 , HORVU4Hr1G002400.10 , HORVU4Hr1G002400.11 , HORVU4Hr1G002400.15 , HORVU4Hr1G002400.14 , HORVU4Hr1G002400.8 , HORVU4Hr1G002400.9 , HORVU4Hr1G002400.1 , HORVU4Hr1G002400.2 , HORVU4Hr1G002400.3 , HORVU4Hr1G002400.4 , HORVU4Hr1G002400.6 , HORVU4Hr1G002400.7
Wheat TraesCS4A02G298000 , TraesCS4A02G298000 , TraesCS4B02G015700 , TraesCS4B02G015700 , TraesCS5A02G022000 , TraesCS5A02G022000 , TraesCS5A02G022000 , TraesCS5D02G027800 , TraesCS5D02G027800 , TraesCS4D02G014000 , TraesCS4D02G014000 , TraesCS5B02G018500
Populus PNT06938 , PNT06939 , PNT06937 , PNT06936


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G518100 DNA-binding bromodomain-containing protein, putative, expressed K11723: bromodomain-containing protein 7
2 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
3 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
4 Sobic.002G374300 FAR1 family protein, expressed K17604: zinc finger SWIM domain-containing protein 3
5 Sobic.010G092300 N-rich protein, putative, expressed -
6 Sobic.001G019800 FAD binding domain containing protein, expressed K06126: ubiquinone biosynthesis monooxygenase Coq6
7 Sobic.010G132600 selenoprotein O, putative, expressed -
8 Sobic.003G253600 protein kinase domain containing protein, expressed -
9 Sobic.010G130300 OsMan07 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
10 Sobic.002G424900 MAG2, putative, expressed -
11 Sobic.002G257750 - -
12 Sobic.004G210800 iron-stress related protein, putative, expressed -
13 Sobic.010G183300 - -
14 Sobic.002G117400 expressed protein -
15 Sobic.008G070800 expressed protein -
16 Sobic.002G202000 double-stranded RNA binding motif containing protein, expressed -
17 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
18 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
20 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G148101 Sobic001G148101 Sobic001G518100 Sobic001G518100 Sobic001G148101--Sobic001G518100 Sobic001G151100 Sobic001G151100 Sobic001G148101--Sobic001G151100 Sobic003G121300 Sobic003G121300 Sobic001G148101--Sobic003G121300 Sobic002G374300 Sobic002G374300 Sobic001G148101--Sobic002G374300 Sobic010G092300 Sobic010G092300 Sobic001G148101--Sobic010G092300 Sobic001G019800 Sobic001G019800 Sobic001G148101--Sobic001G019800 Sobic010G132600 Sobic010G132600 Sobic001G148101--Sobic010G132600 Sobic003G253600 Sobic003G253600 Sobic001G148101--Sobic003G253600 Sobic010G130300 Sobic010G130300 Sobic001G148101--Sobic010G130300 Sobic003G398700 Sobic003G398700 Sobic001G518100--Sobic003G398700 Sobic009G256300 Sobic009G256300 Sobic001G518100--Sobic009G256300 Sobic004G209700 Sobic004G209700 Sobic001G518100--Sobic004G209700 Sobic003G168100 Sobic003G168100 Sobic001G518100--Sobic003G168100 Sobic004G107200 Sobic004G107200 Sobic001G518100--Sobic004G107200 Sobic003G241700 Sobic003G241700 Sobic001G518100--Sobic003G241700 Sobic005G064000 Sobic005G064000 Sobic001G518100--Sobic005G064000 Sobic008G113100 Sobic008G113100 Sobic001G518100--Sobic008G113100 Sobic008G033900 Sobic008G033900 Sobic001G518100--Sobic008G033900 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G087600 Sobic001G087600 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic001G114500 Sobic001G114500 Sobic003G121300--Sobic001G114500 Sobic010G237900 Sobic010G237900 Sobic003G121300--Sobic010G237900 Sobic010G029900 Sobic010G029900 Sobic003G121300--Sobic010G029900 Sobic005G160400 Sobic005G160400 Sobic003G121300--Sobic005G160400 Sobic003G132000 Sobic003G132000 Sobic003G121300--Sobic003G132000 Sobic001G487100 Sobic001G487100 Sobic003G121300--Sobic001G487100 Sobic004G156800 Sobic004G156800 Sobic003G121300--Sobic004G156800 Sobic002G361400 Sobic002G361400 Sobic003G121300--Sobic002G361400 Sobic009G164000 Sobic009G164000 Sobic003G121300--Sobic009G164000 Sobic003G363700 Sobic003G363700 Sobic002G374300--Sobic003G363700 Sobic003G043000 Sobic003G043000 Sobic002G374300--Sobic003G043000 Sobic001G542450 Sobic001G542450 Sobic002G374300--Sobic001G542450 Sobic003G012000 Sobic003G012000 Sobic002G374300--Sobic003G012000 Sobic002G154000 Sobic002G154000 Sobic002G374300--Sobic002G154000 Sobic002G374300--Sobic001G151100 Sobic002G374300--Sobic004G209700 Sobic001G393900 Sobic001G393900 Sobic002G374300--Sobic001G393900 Sobic002G371700 Sobic002G371700 Sobic002G374300--Sobic002G371700 Sobic003G340600 Sobic003G340600 Sobic010G092300--Sobic003G340600 Sobic010G092300--Sobic005G160400 Sobic010G265300 Sobic010G265300 Sobic010G092300--Sobic010G265300 Sobic003G264200 Sobic003G264200 Sobic010G092300--Sobic003G264200 Sobic002G167500 Sobic002G167500 Sobic010G092300--Sobic002G167500 Sobic010G092300--Sobic001G019800 Sobic009G162600 Sobic009G162600 Sobic010G092300--Sobic009G162600 Sobic007G078500 Sobic007G078500 Sobic010G092300--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic010G092300--Sobic001G080700 Sobic007G093800 Sobic007G093800 Sobic001G019800--Sobic007G093800 Sobic002G117400 Sobic002G117400 Sobic001G019800--Sobic002G117400 Sobic003G193500 Sobic003G193500 Sobic001G019800--Sobic003G193500 Sobic004G252900 Sobic004G252900 Sobic001G019800--Sobic004G252900 Sobic003G264100 Sobic003G264100 Sobic001G019800--Sobic003G264100 Sobic004G092500 Sobic004G092500 Sobic001G019800--Sobic004G092500 Sobic001G019800--Sobic010G092300 Sobic001G019800--Sobic005G160400 Sobic001G019800--Sobic010G265300 Sobic002G257750 Sobic002G257750 Sobic010G132600--Sobic002G257750 Sobic004G146600 Sobic004G146600 Sobic010G132600--Sobic004G146600 Sobic005G106600 Sobic005G106600 Sobic010G132600--Sobic005G106600 Sobic005G132000 Sobic005G132000 Sobic010G132600--Sobic005G132000 Sobic004G356700 Sobic004G356700 Sobic010G132600--Sobic004G356700 Sobic003G057233 Sobic003G057233 Sobic010G132600--Sobic003G057233 Sobic010G132600--Sobic003G398700 Sobic003G029500 Sobic003G029500 Sobic010G132600--Sobic003G029500 Sobic004G231900 Sobic004G231900 Sobic010G132600--Sobic004G231900 Sobic006G185100 Sobic006G185100 Sobic003G253600--Sobic006G185100 Sobic003G253600--Sobic002G257750 Sobic003G119600 Sobic003G119600 Sobic003G253600--Sobic003G119600 Sobic002G344000 Sobic002G344000 Sobic003G253600--Sobic002G344000 Sobic001G332500 Sobic001G332500 Sobic003G253600--Sobic001G332500 Sobic003G316500 Sobic003G316500 Sobic003G253600--Sobic003G316500 Sobic003G155100 Sobic003G155100 Sobic003G253600--Sobic003G155100 Sobic005G059800 Sobic005G059800 Sobic003G253600--Sobic005G059800 Sobic008G044100 Sobic008G044100 Sobic003G253600--Sobic008G044100 Sobic004G165000 Sobic004G165000 Sobic010G130300--Sobic004G165000 Sobic002G155000 Sobic002G155000 Sobic010G130300--Sobic002G155000 Sobic002G418600 Sobic002G418600 Sobic010G130300--Sobic002G418600 Sobic002G031700 Sobic002G031700 Sobic010G130300--Sobic002G031700 Sobic001G153300 Sobic001G153300 Sobic010G130300--Sobic001G153300 Sobic002G048200 Sobic002G048200 Sobic010G130300--Sobic002G048200 Sobic005G026000 Sobic005G026000 Sobic010G130300--Sobic005G026000 Sobic007G030800 Sobic007G030800 Sobic010G130300--Sobic007G030800 Sobic001G220000 Sobic001G220000 Sobic010G130300--Sobic001G220000
Octagon: transcription factors


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