Gene annotation
Transcriptome id Sobic.001G171900.2,Sobic.001G171900.1
Synonym Sb01g015000
Functional annotation Glycerophosphoryl diester phosphodiesterase precursor (Os) (PubMedID : 27208977)
glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt A0A1Z5S6M7 , C5WT78
Pfam PF03009
Panther DB PTHR23344 PTHR23344:SF19
NCBI CDD KOG2258; Glycerophosphoryl diester phosphodiesterase
KEGG Orthology K01126; E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process GO:0008889glycerophosphodiester phosphodiesterase activity


Orthologs (automatic annotation)
TAIR AT5G08030 : PLC-like phosphodiesterases superfamily protein
RAP-DB (Rice) LOC_Os03g40670.1 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK14256
Barley HORVU2Hr1G087820.3 , HORVU2Hr1G087820.2 , HORVU2Hr1G087820.1 , HORVU1Hr1G024870.8 , HORVU1Hr1G024870.9 , HORVU1Hr1G024870.1 , HORVU1Hr1G024870.2 , HORVU1Hr1G024870.3 , HORVU1Hr1G024870.4 , HORVU1Hr1G024870.5 , HORVU1Hr1G024870.6 , HORVU1Hr1G024870.7 , HORVU6Hr1G074900.2 , HORVU6Hr1G074900.3 , HORVU6Hr1G074900.1 , HORVU6Hr1G024750.1 , HORVU1Hr1G024870.12 , HORVU1Hr1G024870.13 , HORVU1Hr1G024870.10 , HORVU1Hr1G024870.11 , HORVU1Hr1G024870.14 , HORVU1Hr1G024870.15 , HORVU1Hr1G024870.18
Wheat TraesCS1A02G113300 , TraesCS1D02G114700 , TraesCS1D02G114600 , TraesCS1B02G133400 , TraesCS1B02G133400 , TraesCS1A02G113200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G127350 - -
2 Sobic.009G089101 - -
3 Sobic.002G098800 peroxiredoxin, putative, expressed -
4 Sobic.010G093500 CSLA3 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
5 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
6 Sobic.006G200800 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
7 Sobic.004G307400 peptidase, M24 family protein, putative, expressed K01265: methionyl aminopeptidase
8 Sobic.004G274100 expressed protein -
9 Sobic.005G149400 maf, putative, expressed K06287: septum formation protein
10 Sobic.010G019700 cytochrome P450 86A1, putative, expressed -
11 Sobic.001G069000 ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
12 Sobic.009G085500 hydrolase, alpha/beta fold family protein, putative, expressed -
13 Sobic.008G066100 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed -
14 Sobic.005G110502 - -
15 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
16 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
17 Sobic.001G536800 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
18 Sobic.008G151000 wall-associated receptor kinase 3 precursor, putative, expressed -
19 Sobic.002G145000 DNA-directed RNA polymerase subunit, putative, expressed K03011: RPB3, DNA-directed RNA polymerase II subunit RPB3
20 Sobic.005G123200 cbbY, putative, expressed -


Gene co-expression network
sample Sobic001G171900 Sobic001G171900 Sobic006G127350 Sobic006G127350 Sobic001G171900--Sobic006G127350 Sobic009G089101 Sobic009G089101 Sobic001G171900--Sobic009G089101 Sobic002G098800 Sobic002G098800 Sobic001G171900--Sobic002G098800 Sobic010G093500 Sobic010G093500 Sobic001G171900--Sobic010G093500 Sobic004G026700 Sobic004G026700 Sobic001G171900--Sobic004G026700 Sobic006G200800 Sobic006G200800 Sobic001G171900--Sobic006G200800 Sobic004G307400 Sobic004G307400 Sobic001G171900--Sobic004G307400 Sobic004G274100 Sobic004G274100 Sobic001G171900--Sobic004G274100 Sobic005G149400 Sobic005G149400 Sobic001G171900--Sobic005G149400 Sobic006G127350--Sobic001G171900 Sobic008G105850 Sobic008G105850 Sobic006G127350--Sobic008G105850 Sobic006G127350--Sobic010G093500 Sobic010G094301 Sobic010G094301 Sobic006G127350--Sobic010G094301 Sobic010G109500 Sobic010G109500 Sobic006G127350--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic006G127350--Sobic006G234100 Sobic002G000500 Sobic002G000500 Sobic006G127350--Sobic002G000500 Sobic005G123200 Sobic005G123200 Sobic006G127350--Sobic005G123200 Sobic006G222700 Sobic006G222700 Sobic006G127350--Sobic006G222700 Sobic003G032600 Sobic003G032600 Sobic009G089101--Sobic003G032600 Sobic009G089101--Sobic001G171900 Sobic001G078400 Sobic001G078400 Sobic009G089101--Sobic001G078400 Sobic004G016400 Sobic004G016400 Sobic009G089101--Sobic004G016400 Sobic005G100250 Sobic005G100250 Sobic009G089101--Sobic005G100250 Sobic007G029700 Sobic007G029700 Sobic009G089101--Sobic007G029700 Sobic002G237800 Sobic002G237800 Sobic009G089101--Sobic002G237800 Sobic003G351401 Sobic003G351401 Sobic009G089101--Sobic003G351401 Sobic009G089101--Sobic004G307400 Sobic001G069000 Sobic001G069000 Sobic002G098800--Sobic001G069000 Sobic004G308700 Sobic004G308700 Sobic002G098800--Sobic004G308700 Sobic008G021300 Sobic008G021300 Sobic002G098800--Sobic008G021300 Sobic004G272100 Sobic004G272100 Sobic002G098800--Sobic004G272100 Sobic008G066100 Sobic008G066100 Sobic002G098800--Sobic008G066100 Sobic004G035500 Sobic004G035500 Sobic002G098800--Sobic004G035500 Sobic010G201700 Sobic010G201700 Sobic002G098800--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic002G098800--Sobic003G303700 Sobic002G098800--Sobic004G274100 Sobic010G093500--Sobic006G127350 Sobic010G030800 Sobic010G030800 Sobic010G093500--Sobic010G030800 Sobic004G095000 Sobic004G095000 Sobic010G093500--Sobic004G095000 Sobic003G069100 Sobic003G069100 Sobic010G093500--Sobic003G069100 Sobic008G067200 Sobic008G067200 Sobic010G093500--Sobic008G067200 Sobic001G300800 Sobic001G300800 Sobic010G093500--Sobic001G300800 Sobic005G202600 Sobic005G202600 Sobic010G093500--Sobic005G202600 Sobic010G093500--Sobic008G105850 Sobic003G131000 Sobic003G131000 Sobic010G093500--Sobic003G131000 Sobic004G026700--Sobic002G000500 Sobic001G274600 Sobic001G274600 Sobic004G026700--Sobic001G274600 Sobic001G361700 Sobic001G361700 Sobic004G026700--Sobic001G361700 Sobic002G040100 Sobic002G040100 Sobic004G026700--Sobic002G040100 Sobic006G011100 Sobic006G011100 Sobic004G026700--Sobic006G011100 Sobic003G199800 Sobic003G199800 Sobic004G026700--Sobic003G199800 Sobic004G035601 Sobic004G035601 Sobic004G026700--Sobic004G035601 Sobic003G209800 Sobic003G209800 Sobic004G026700--Sobic003G209800 Sobic001G338700 Sobic001G338700 Sobic004G026700--Sobic001G338700 Sobic008G019100 Sobic008G019100 Sobic006G200800--Sobic008G019100 Sobic006G200800--Sobic008G021300 Sobic006G054300 Sobic006G054300 Sobic006G200800--Sobic006G054300 Sobic001G192100 Sobic001G192100 Sobic006G200800--Sobic001G192100 Sobic006G200800--Sobic004G274100 Sobic001G010100 Sobic001G010100 Sobic006G200800--Sobic001G010100 Sobic004G343900 Sobic004G343900 Sobic006G200800--Sobic004G343900 Sobic003G132100 Sobic003G132100 Sobic006G200800--Sobic003G132100 Sobic001G527000 Sobic001G527000 Sobic006G200800--Sobic001G527000 Sobic004G307400--Sobic005G149400 Sobic004G307400--Sobic004G343900 Sobic009G030800 Sobic009G030800 Sobic004G307400--Sobic009G030800 Sobic003G387100 Sobic003G387100 Sobic004G307400--Sobic003G387100 Sobic001G291900 Sobic001G291900 Sobic004G307400--Sobic001G291900 SobicK031800 SobicK031800 Sobic004G307400--SobicK031800 Sobic004G307400--Sobic004G016400 Sobic004G336000 Sobic004G336000 Sobic004G307400--Sobic004G336000 Sobic009G030900 Sobic009G030900 Sobic004G307400--Sobic009G030900 Sobic007G140800 Sobic007G140800 Sobic004G274100--Sobic007G140800 Sobic004G274100--Sobic003G303700 Sobic004G274100--Sobic002G098800 Sobic009G113800 Sobic009G113800 Sobic004G274100--Sobic009G113800 Sobic001G102800 Sobic001G102800 Sobic004G274100--Sobic001G102800 Sobic004G274100--Sobic008G021300 Sobic004G274100--Sobic010G201700 Sobic004G274100--Sobic001G069000 Sobic008G188600 Sobic008G188600 Sobic004G274100--Sobic008G188600 Sobic005G149400--Sobic004G307400 Sobic005G149400--Sobic004G336000 Sobic005G149400--Sobic004G016400 Sobic005G149400--SobicK031800 Sobic005G149400--Sobic003G387100 Sobic005G149400--Sobic009G030800 Sobic001G309300 Sobic001G309300 Sobic005G149400--Sobic001G309300 Sobic009G059300 Sobic009G059300 Sobic005G149400--Sobic009G059300 Sobic008G073100 Sobic008G073100 Sobic005G149400--Sobic008G073100
Octagon: transcription factors


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