Gene annotation
Transcriptome id Sobic.001G185400.1
Synonym Sb01g016100
Functional annotation Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
MATE efflux family protein, putative, expressed
UniProt C5WUC5
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF140
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G21690 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g37640.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a017375 , Zm00025a017379 , Zm00025a017378 , Zm00025a007085 , Zm00025a007080 , Zm00025a048219 , Zm00025a007083
Brachypodium KQK14356 , KQK14361 , KQK14360
Barley HORVU1Hr1G007910.10 , HORVU3Hr1G110380.1 , HORVU3Hr1G110380.2 , HORVU3Hr1G110380.3 , HORVU3Hr1G110460.5 , HORVU3Hr1G110460.4 , HORVU3Hr1G110460.6 , HORVU3Hr1G110460.1 , HORVU3Hr1G110460.3 , HORVU3Hr1G110460.2 , HORVU1Hr1G007910.1 , HORVU1Hr1G007910.2 , HORVU1Hr1G007910.3 , HORVU1Hr1G007910.4 , HORVU1Hr1G007910.5 , HORVU1Hr1G007910.6 , HORVU1Hr1G007910.7 , HORVU1Hr1G007910.8 , HORVU1Hr1G007910.9 , HORVU5Hr1G082890.10 , HORVU5Hr1G082890.11 , HORVU5Hr1G082890.9 , HORVU5Hr1G082890.2 , HORVU5Hr1G082890.3 , HORVU5Hr1G082890.1 , HORVU5Hr1G082890.6 , HORVU5Hr1G082890.7 , HORVU5Hr1G082890.5
Wheat TraesCS3B02G563500 , TraesCS5D02G332300 , TraesCS1B02G037000 , TraesCS3A02G499200 , TraesCS3A02G499200 , TraesCS5A02G326300 , TraesCS3D02G506700 , TraesCS5A02G326300 , TraesCS3A02G500000 , TraesCS3A02G500000 , TraesCS5A02G326300 , TraesCS3D02G506100 , TraesCS3D02G506100 , TraesCS1A02G029900 , TraesCS3B02G562400 , TraesCS3B02G562400 , TraesCS3D02G506200 , TraesCS5A02G326700 , TraesCS3B02G563100 , TraesCS3A02G499300 , TraesCS3B02G563400 , TraesCS3A02G499800 , TraesCS3D02G506500 , TraesCS3D02G506500 , TraesCS3D02G506500 , TraesCS5B02G326600 , TraesCS3B02G562500 , TraesCS1D02G030400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G410700 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
2 Sobic.006G102800 transporter family protein, putative, expressed -
3 Sobic.004G149100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@gibberellin 20 oxidase 2, putative, expressed -
4 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
5 Sobic.006G160700 Beta-fructofuranosidase 1 (Precursor)(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
6 Sobic.004G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed -
7 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
8 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
9 Sobic.009G259200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
10 Sobic.006G038200 receptor protein kinase, putative, expressed -
11 Sobic.007G119600 clathrin adaptor complex small chain domain containing protein, expressed K12403: AP-4 complex subunit sigma-1
12 Sobic.002G078300 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
13 Sobic.003G149000 Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
14 Sobic.001G457000 ATP synthase gamma chain, putative, expressed K02136: ATPeF1G, ATP5C1, F-type H+-transporting ATPase subunit gamma
15 Sobic.001G282500 NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed K11352: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12
16 Sobic.009G176400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.009G224400 ATP synthase, putative, expressed K02133: ATPeF1B, ATP5B, F-type H+-transporting ATPase subunit beta
18 Sobic.003G170300 LYR motif containing protein, putative, expressed K03950: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
19 Sobic.009G191400 NADH dehydrogenase flavoprotein 2, mitochondrial precursor, putative, expressed K03943: NADH dehydrogenase (ubiquinone) flavoprotein 2
20 Sobic.008G150300 Lg106, putative, expressed -


Gene co-expression network
sample Sobic001G185400 Sobic001G185400 Sobic002G410700 Sobic002G410700 Sobic001G185400--Sobic002G410700 Sobic006G102800 Sobic006G102800 Sobic001G185400--Sobic006G102800 Sobic004G149100 Sobic004G149100 Sobic001G185400--Sobic004G149100 Sobic006G237200 Sobic006G237200 Sobic001G185400--Sobic006G237200 Sobic006G160700 Sobic006G160700 Sobic001G185400--Sobic006G160700 Sobic004G232700 Sobic004G232700 Sobic001G185400--Sobic004G232700 Sobic010G032600 Sobic010G032600 Sobic001G185400--Sobic010G032600 Sobic002G395000 Sobic002G395000 Sobic001G185400--Sobic002G395000 Sobic009G259200 Sobic009G259200 Sobic001G185400--Sobic009G259200 Sobic003G216500 Sobic003G216500 Sobic002G410700--Sobic003G216500 Sobic002G410700--Sobic006G237200 Sobic009G256000 Sobic009G256000 Sobic002G410700--Sobic009G256000 Sobic008G150300 Sobic008G150300 Sobic002G410700--Sobic008G150300 Sobic001G473400 Sobic001G473400 Sobic002G410700--Sobic001G473400 Sobic006G020900 Sobic006G020900 Sobic002G410700--Sobic006G020900 Sobic009G240700 Sobic009G240700 Sobic002G410700--Sobic009G240700 Sobic007G161200 Sobic007G161200 Sobic002G410700--Sobic007G161200 Sobic003G170300 Sobic003G170300 Sobic002G410700--Sobic003G170300 Sobic003G149000 Sobic003G149000 Sobic006G102800--Sobic003G149000 Sobic006G102800--Sobic006G160700 Sobic003G266400 Sobic003G266400 Sobic006G102800--Sobic003G266400 Sobic001G035600 Sobic001G035600 Sobic006G102800--Sobic001G035600 Sobic006G102800--Sobic009G240700 Sobic006G102800--Sobic009G259200 Sobic006G102800--Sobic001G185400 Sobic006G038200 Sobic006G038200 Sobic006G102800--Sobic006G038200 Sobic002G072200 Sobic002G072200 Sobic006G102800--Sobic002G072200 Sobic004G149100--Sobic004G232700 Sobic002G111500 Sobic002G111500 Sobic004G149100--Sobic002G111500 Sobic001G543400 Sobic001G543400 Sobic004G149100--Sobic001G543400 Sobic010G018500 Sobic010G018500 Sobic004G149100--Sobic010G018500 Sobic002G101300 Sobic002G101300 Sobic004G149100--Sobic002G101300 Sobic001G102100 Sobic001G102100 Sobic004G149100--Sobic001G102100 Sobic002G381400 Sobic002G381400 Sobic004G149100--Sobic002G381400 Sobic002G153000 Sobic002G153000 Sobic004G149100--Sobic002G153000 Sobic004G149100--Sobic003G266400 Sobic006G237200--Sobic002G410700 Sobic006G237200--Sobic009G256000 Sobic008G021200 Sobic008G021200 Sobic006G237200--Sobic008G021200 Sobic006G237200--Sobic007G161200 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G237200--Sobic006G020900 Sobic005G018800 Sobic005G018800 Sobic006G237200--Sobic005G018800 Sobic001G110300 Sobic001G110300 Sobic006G237200--Sobic001G110300 Sobic004G260200 Sobic004G260200 Sobic006G160700--Sobic004G260200 Sobic001G282500 Sobic001G282500 Sobic006G160700--Sobic001G282500 Sobic009G215300 Sobic009G215300 Sobic006G160700--Sobic009G215300 Sobic010G031000 Sobic010G031000 Sobic006G160700--Sobic010G031000 Sobic006G160700--Sobic006G102800 Sobic004G078000 Sobic004G078000 Sobic006G160700--Sobic004G078000 Sobic001G404800 Sobic001G404800 Sobic006G160700--Sobic001G404800 Sobic004G173700 Sobic004G173700 Sobic006G160700--Sobic004G173700 Sobic006G160700--Sobic010G032600 Sobic007G212100 Sobic007G212100 Sobic004G232700--Sobic007G212100 Sobic002G352200 Sobic002G352200 Sobic004G232700--Sobic002G352200 Sobic004G232700--Sobic001G543400 Sobic009G176400 Sobic009G176400 Sobic004G232700--Sobic009G176400 Sobic007G014700 Sobic007G014700 Sobic004G232700--Sobic007G014700 Sobic004G251600 Sobic004G251600 Sobic004G232700--Sobic004G251600 Sobic004G232700--Sobic004G173700 Sobic004G261800 Sobic004G261800 Sobic004G232700--Sobic004G261800 Sobic002G124900 Sobic002G124900 Sobic004G232700--Sobic002G124900 Sobic007G023400 Sobic007G023400 Sobic010G032600--Sobic007G023400 Sobic010G032600--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic010G032600--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic010G032600--Sobic004G297700 Sobic001G457000 Sobic001G457000 Sobic010G032600--Sobic001G457000 Sobic002G262200 Sobic002G262200 Sobic010G032600--Sobic002G262200 Sobic001G073600 Sobic001G073600 Sobic010G032600--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic010G032600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic010G032600--Sobic009G224400 Sobic002G395000--Sobic004G260200 Sobic003G135600 Sobic003G135600 Sobic002G395000--Sobic003G135600 Sobic002G395000--Sobic009G224400 Sobic003G238500 Sobic003G238500 Sobic002G395000--Sobic003G238500 Sobic002G309700 Sobic002G309700 Sobic002G395000--Sobic002G309700 Sobic002G395000--Sobic001G073600 Sobic004G155100 Sobic004G155100 Sobic002G395000--Sobic004G155100 Sobic002G395000--Sobic007G023400 Sobic002G078300 Sobic002G078300 Sobic002G395000--Sobic002G078300 Sobic009G259200--Sobic001G457000 Sobic009G259200--Sobic009G224400 Sobic003G260600 Sobic003G260600 Sobic009G259200--Sobic003G260600 Sobic007G119600 Sobic007G119600 Sobic009G259200--Sobic007G119600 Sobic003G028200 Sobic003G028200 Sobic009G259200--Sobic003G028200 Sobic002G255400 Sobic002G255400 Sobic009G259200--Sobic002G255400 Sobic003G201500 Sobic003G201500 Sobic009G259200--Sobic003G201500 Sobic009G259200--Sobic004G173700 Sobic003G089100 Sobic003G089100 Sobic009G259200--Sobic003G089100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.