Gene annotation
| Transcriptome id | Sobic.004G149100.1 |
|---|---|
| Synonym | Sb04g019760 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) gibberellin 20 oxidase 2, putative, expressed |
| UniProt | A0A194YPW6 |
| Pfam | PF14226 PF03171 |
| Panther DB | PTHR10209 PTHR10209:SF108 |
| NCBI CDD | KOG0143; Iron/ascorbate family oxidoreductases |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT1G14130 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g39980.1 : gibberellin 20 oxidase 2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005972 , Zm00025a011013 |
| Brachypodium | KQJ83140 |
| Barley | HORVU2Hr1G082370.2 , HORVU2Hr1G082370.3 , HORVU2Hr1G082370.4 , HORVU2Hr1G082370.5 , HORVU2Hr1G082370.6 , HORVU2Hr1G082370.7 , HORVU1Hr1G070710.1 , HORVU1Hr1G070710.2 , HORVU1Hr1G070710.3 , HORVU1Hr1G070710.4 , HORVU1Hr1G070710.5 , HORVU1Hr1G070710.6 |
| Wheat | TraesCS2D02G335000 , TraesCS6D02G190400 , TraesCS2A02G327900 , TraesCS2B02G359000 , TraesCS2B02G354100 , TraesCS2B02G354100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G232700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed | - |
| 2 | Sobic.002G111500 | Fatty acyl-ACP thioesterases B FATB (At)(PubMedID : 27208977)@myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed | K10781: fatty acyl-ACP thioesterase B |
| 3 | Sobic.001G543400 | phosphoglycerate mutase, putative, expressed | - |
| 4 | Sobic.010G018500 | expressed protein | - |
| 5 | Sobic.002G101300 | erythronate-4-phosphate dehydrogenase domain containing protein, expressed | - |
| 6 | Sobic.001G102100 | DUF617 domain containing protein, expressed | - |
| 7 | Sobic.002G381400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed | K01087: trehalose 6-phosphate phosphatase |
| 8 | Sobic.002G153000 | oxidoreductase domain protein, putative, expressed | - |
| 9 | Sobic.003G266400 | clathrin assembly protein, putative, expressed | - |
| 10 | Sobic.008G057900 | OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
| 11 | Sobic.010G114000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@inorganic H+ pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 12 | Sobic.008G149500 | expressed protein | - |
| 13 | Sobic.002G271300 | NC domain-containing protein, putative, expressed | - |
| 14 | Sobic.001G146000 | tubulin/FtsZ domain containing protein, putative, expressed | K07375: tubulin beta |
| 15 | Sobic.005G050800 | expressed protein | - |
| 16 | Sobic.003G087700 | glycosyltransferase protein, putative, expressed | - |
| 17 | Sobic.010G101600 | pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed | K00895: pfp, diphosphate-dependent phosphofructokinase |
| 18 | Sobic.001G217500 | transporter-related, putative, expressed | K15285: solute carrier family 35, member E3 |
| 19 | Sobic.009G259200 | nucleoside diphosphate kinase, putative, expressed | K00940: ndk, nucleoside-diphosphate kinase |
| 20 | Sobic.001G346500 | Ca exchanger(PubMedID : 22196357)@sodium/calcium exchanger protein, putative, expressed | K07300: chaA, Ca2+:H+ antiporter |
Gene co-expression network
Octagon: transcription factors
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