Gene annotation
Transcriptome id Sobic.001G260500.1
Synonym
Functional annotation expressed protein
UniProt A0A1B6QL55
Pfam PF12090
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003712; transcription coregulator activity GO:0000124SAGA complex


Orthologs (automatic annotation)
TAIR AT1G72390 : -
RAP-DB (Rice) LOC_Os10g25200.1 : expressed protein
MaizeGDB (Corn) Zm00025a034341
Brachypodium KQJ96452
Barley HORVU1Hr1G031860.1 , HORVU1Hr1G031860.3 , HORVU1Hr1G031860.2 , HORVU1Hr1G031860.5 , HORVU1Hr1G031860.4 , HORVU1Hr1G031860.7 , HORVU1Hr1G031860.6 , HORVU1Hr1G031860.9 , HORVU1Hr1G031860.8 , HORVU1Hr1G031860.15 , HORVU1Hr1G031860.14 , HORVU1Hr1G031860.11 , HORVU1Hr1G031860.10 , HORVU1Hr1G031860.13
Wheat TraesCS1A02G131000 , TraesCS1A02G131000 , TraesCS1A02G131000 , TraesCS1A02G131000 , TraesCS1B02G153400 , TraesCS1B02G153400 , TraesCS1B02G153400 , TraesCS1D02G132200 , TraesCS1D02G132200 , TraesCS1D02G132200 , TraesCS1D02G132200 , TraesCS1D02G132200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
2 Sobic.006G115600 expressed protein -
3 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
4 Sobic.004G127400 CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed -
5 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
6 Sobic.006G040500 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
7 Sobic.003G225700 - -
8 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
9 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
10 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
11 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
12 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
13 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.001G050200 expressed protein -
15 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
16 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
17 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
18 Sobic.006G037700 phosphoribulokinase/Uridine kinase family protein, expressed -
19 Sobic.009G047200 protein kinase domain containing protein, expressed -
20 Sobic.001G299700 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1


Gene co-expression network
sample Sobic001G260500 Sobic001G260500 Sobic001G058700 Sobic001G058700 Sobic001G260500--Sobic001G058700 Sobic006G115600 Sobic006G115600 Sobic001G260500--Sobic006G115600 Sobic003G408600 Sobic003G408600 Sobic001G260500--Sobic003G408600 Sobic004G127400 Sobic004G127400 Sobic001G260500--Sobic004G127400 Sobic004G113400 Sobic004G113400 Sobic001G260500--Sobic004G113400 Sobic006G040500 Sobic006G040500 Sobic001G260500--Sobic006G040500 Sobic003G225700 Sobic003G225700 Sobic001G260500--Sobic003G225700 Sobic001G196500 Sobic001G196500 Sobic001G260500--Sobic001G196500 Sobic005G026200 Sobic005G026200 Sobic001G260500--Sobic005G026200 Sobic001G058700--Sobic003G408600 Sobic007G172400 Sobic007G172400 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic007G075400 Sobic007G075400 Sobic006G115600--Sobic007G075400 Sobic002G045600 Sobic002G045600 Sobic006G115600--Sobic002G045600 Sobic004G264400 Sobic004G264400 Sobic006G115600--Sobic004G264400 Sobic001G050200 Sobic001G050200 Sobic006G115600--Sobic001G050200 Sobic010G139600 Sobic010G139600 Sobic006G115600--Sobic010G139600 Sobic004G331100 Sobic004G331100 Sobic006G115600--Sobic004G331100 Sobic007G163100 Sobic007G163100 Sobic006G115600--Sobic007G163100 Sobic003G118200 Sobic003G118200 Sobic006G115600--Sobic003G118200 Sobic010G278200 Sobic010G278200 Sobic006G115600--Sobic010G278200 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic009G047200 Sobic009G047200 Sobic004G127400--Sobic009G047200 Sobic002G143500 Sobic002G143500 Sobic004G127400--Sobic002G143500 Sobic001G071400 Sobic001G071400 Sobic004G127400--Sobic001G071400 Sobic007G116200 Sobic007G116200 Sobic004G127400--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic004G127400--Sobic006G131500 Sobic004G127400--Sobic006G040500 Sobic002G008900 Sobic002G008900 Sobic004G127400--Sobic002G008900 Sobic001G363500 Sobic001G363500 Sobic004G127400--Sobic001G363500 Sobic006G055200 Sobic006G055200 Sobic004G127400--Sobic006G055200 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic003G186000 Sobic003G186000 Sobic006G040500--Sobic003G186000 Sobic005G001000 Sobic005G001000 Sobic006G040500--Sobic005G001000 Sobic006G040500--Sobic007G062800 Sobic006G040500--Sobic005G112300 Sobic010G010700 Sobic010G010700 Sobic006G040500--Sobic010G010700 Sobic006G040500--Sobic002G008900 Sobic009G256400 Sobic009G256400 Sobic006G040500--Sobic009G256400 Sobic010G123600 Sobic010G123600 Sobic006G040500--Sobic010G123600 Sobic004G276400 Sobic004G276400 Sobic006G040500--Sobic004G276400 Sobic003G225700--Sobic005G112300 Sobic002G299700 Sobic002G299700 Sobic003G225700--Sobic002G299700 Sobic003G225700--Sobic001G363500 Sobic005G118600 Sobic005G118600 Sobic003G225700--Sobic005G118600 Sobic001G241200 Sobic001G241200 Sobic003G225700--Sobic001G241200 Sobic003G225700--Sobic002G071500 Sobic003G372700 Sobic003G372700 Sobic003G225700--Sobic003G372700 Sobic003G225700--Sobic006G040500 Sobic008G084700 Sobic008G084700 Sobic003G225700--Sobic008G084700 Sobic003G229500 Sobic003G229500 Sobic001G196500--Sobic003G229500 Sobic001G196500--Sobic002G299700 Sobic010G275500 Sobic010G275500 Sobic001G196500--Sobic010G275500 Sobic008G132600 Sobic008G132600 Sobic001G196500--Sobic008G132600 Sobic003G101400 Sobic003G101400 Sobic001G196500--Sobic003G101400 Sobic001G196500--Sobic001G540400 Sobic001G196500--Sobic003G408600 Sobic001G196500--Sobic002G397500 Sobic001G457900 Sobic001G457900 Sobic001G196500--Sobic001G457900 Sobic004G004300 Sobic004G004300 Sobic005G026200--Sobic004G004300 Sobic005G026200--Sobic001G534800 Sobic001G281100 Sobic001G281100 Sobic005G026200--Sobic001G281100 Sobic005G003300 Sobic005G003300 Sobic005G026200--Sobic005G003300 Sobic005G026200--Sobic002G397500 Sobic010G053800 Sobic010G053800 Sobic005G026200--Sobic010G053800 Sobic003G072200 Sobic003G072200 Sobic005G026200--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic005G026200--Sobic001G065000 Sobic005G026200--Sobic004G113400
Octagon: transcription factors


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