Gene annotation
Transcriptome id Sobic.001G293400.1
Synonym Sb01g028660, ATL4, TL4
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WRF7
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF98
NCBI CDD -
KEGG Orthology K10663; E3 ubiquitin-protein ligase ATL4
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G40250 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os10g41660.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051868 , Zm00025a003431
Brachypodium KQJ97858
Barley HORVU1Hr1G054770.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
2 Sobic.002G349300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
3 Sobic.009G235300 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K01247: DNA-3-methyladenine glycosylase II
4 Sobic.002G199100 peptidyl-prolyl cis-trans isomerase, putative, expressed K09579: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
5 Sobic.001G144300 acetyltransferase, GNAT family, putative, expressed -
6 Sobic.003G260800 expressed protein -
7 Sobic.008G109200 - -
8 Sobic.006G274500 plant-specific domain TIGR01627 family protein, expressed -
9 Sobic.003G118900 disease resistance protein RGA2, putative, expressed -
10 Sobic.004G177100 RNA methyltransferase protein, putative, expressed K15430: TRM11, tRNA (guanine10-N2)-methyltransferase
11 Sobic.004G107900 bZIP transcription factor family protein, putative, expressed -
12 Sobic.004G172600 tetratricopeptide repeat containing protein, putative, expressed -
13 Sobic.003G117100 h/ACA ribonucleoprotein complex subunit 4, putative, expressed K11131: DKC1, NOLA4, H/ACA ribonucleoprotein complex subunit 4
14 Sobic.004G161800 - -
15 Sobic.001G171500 presenilin, putative, expressed K04505: PSEN1, presenilin 1
16 Sobic.001G296300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.006G008200 phosphomannomutase, putative, expressed -
18 Sobic.001G239400 hsp20/alpha crystallin family protein, putative, expressed -
19 Sobic.010G210600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
20 Sobic.001G462100 MFP1 attachment factor 1, putative, expressed -


Gene co-expression network
sample Sobic001G293400 Sobic001G293400 Sobic006G018900 Sobic006G018900 Sobic001G293400--Sobic006G018900 Sobic002G349300 Sobic002G349300 Sobic001G293400--Sobic002G349300 Sobic009G235300 Sobic009G235300 Sobic001G293400--Sobic009G235300 Sobic002G199100 Sobic002G199100 Sobic001G293400--Sobic002G199100 Sobic001G144300 Sobic001G144300 Sobic001G293400--Sobic001G144300 Sobic003G260800 Sobic003G260800 Sobic001G293400--Sobic003G260800 Sobic008G109200 Sobic008G109200 Sobic001G293400--Sobic008G109200 Sobic006G274500 Sobic006G274500 Sobic001G293400--Sobic006G274500 Sobic003G118900 Sobic003G118900 Sobic001G293400--Sobic003G118900 Sobic010G194500 Sobic010G194500 Sobic006G018900--Sobic010G194500 Sobic001G005000 Sobic001G005000 Sobic006G018900--Sobic001G005000 Sobic004G153700 Sobic004G153700 Sobic006G018900--Sobic004G153700 Sobic004G107900 Sobic004G107900 Sobic006G018900--Sobic004G107900 Sobic009G076800 Sobic009G076800 Sobic006G018900--Sobic009G076800 Sobic010G014300 Sobic010G014300 Sobic006G018900--Sobic010G014300 Sobic007G092300 Sobic007G092300 Sobic006G018900--Sobic007G092300 Sobic006G003000 Sobic006G003000 Sobic006G018900--Sobic006G003000 Sobic001G239400 Sobic001G239400 Sobic006G018900--Sobic001G239400 Sobic003G008300 Sobic003G008300 Sobic002G349300--Sobic003G008300 Sobic001G513100 Sobic001G513100 Sobic002G349300--Sobic001G513100 Sobic004G288400 Sobic004G288400 Sobic002G349300--Sobic004G288400 Sobic003G395500 Sobic003G395500 Sobic002G349300--Sobic003G395500 Sobic006G166700 Sobic006G166700 Sobic002G349300--Sobic006G166700 Sobic006G176100 Sobic006G176100 Sobic002G349300--Sobic006G176100 Sobic005G198300 Sobic005G198300 Sobic002G349300--Sobic005G198300 Sobic002G046700 Sobic002G046700 Sobic002G349300--Sobic002G046700 Sobic002G349300--Sobic002G199100 Sobic010G097400 Sobic010G097400 Sobic009G235300--Sobic010G097400 Sobic003G128500 Sobic003G128500 Sobic009G235300--Sobic003G128500 Sobic009G088401 Sobic009G088401 Sobic009G235300--Sobic009G088401 Sobic003G377200 Sobic003G377200 Sobic009G235300--Sobic003G377200 Sobic006G177100 Sobic006G177100 Sobic009G235300--Sobic006G177100 Sobic003G284500 Sobic003G284500 Sobic009G235300--Sobic003G284500 Sobic003G390300 Sobic003G390300 Sobic009G235300--Sobic003G390300 Sobic004G109500 Sobic004G109500 Sobic009G235300--Sobic004G109500 Sobic001G062700 Sobic001G062700 Sobic009G235300--Sobic001G062700 Sobic007G106400 Sobic007G106400 Sobic002G199100--Sobic007G106400 Sobic007G022200 Sobic007G022200 Sobic002G199100--Sobic007G022200 Sobic010G171400 Sobic010G171400 Sobic002G199100--Sobic010G171400 Sobic002G199100--Sobic002G046700 Sobic001G172800 Sobic001G172800 Sobic002G199100--Sobic001G172800 Sobic002G273100 Sobic002G273100 Sobic002G199100--Sobic002G273100 Sobic007G046400 Sobic007G046400 Sobic002G199100--Sobic007G046400 Sobic004G307700 Sobic004G307700 Sobic002G199100--Sobic004G307700 Sobic006G241900 Sobic006G241900 Sobic002G199100--Sobic006G241900 Sobic004G249700 Sobic004G249700 Sobic001G144300--Sobic004G249700 Sobic007G133600 Sobic007G133600 Sobic001G144300--Sobic007G133600 Sobic009G008300 Sobic009G008300 Sobic001G144300--Sobic009G008300 Sobic002G032900 Sobic002G032900 Sobic001G144300--Sobic002G032900 Sobic010G143900 Sobic010G143900 Sobic001G144300--Sobic010G143900 Sobic001G144300--Sobic006G018900 Sobic001G144300--Sobic001G005000 Sobic001G144300--Sobic001G239400 Sobic001G144300--Sobic004G107900 Sobic003G260800--Sobic002G046700 Sobic010G210800 Sobic010G210800 Sobic003G260800--Sobic010G210800 Sobic009G241500 Sobic009G241500 Sobic003G260800--Sobic009G241500 Sobic006G045000 Sobic006G045000 Sobic003G260800--Sobic006G045000 Sobic008G181801 Sobic008G181801 Sobic003G260800--Sobic008G181801 Sobic008G085350 Sobic008G085350 Sobic003G260800--Sobic008G085350 Sobic005G133166 Sobic005G133166 Sobic003G260800--Sobic005G133166 Sobic004G209500 Sobic004G209500 Sobic003G260800--Sobic004G209500 Sobic003G248901 Sobic003G248901 Sobic003G260800--Sobic003G248901 Sobic006G031200 Sobic006G031200 Sobic008G109200--Sobic006G031200 Sobic005G093400 Sobic005G093400 Sobic008G109200--Sobic005G093400 Sobic009G032100 Sobic009G032100 Sobic008G109200--Sobic009G032100 Sobic009G245700 Sobic009G245700 Sobic008G109200--Sobic009G245700 Sobic004G309500 Sobic004G309500 Sobic008G109200--Sobic004G309500 Sobic009G024600 Sobic009G024600 Sobic008G109200--Sobic009G024600 Sobic004G349300 Sobic004G349300 Sobic008G109200--Sobic004G349300 Sobic003G264901 Sobic003G264901 Sobic008G109200--Sobic003G264901 Sobic003G401400 Sobic003G401400 Sobic008G109200--Sobic003G401400 Sobic008G081400 Sobic008G081400 Sobic006G274500--Sobic008G081400 Sobic009G181300 Sobic009G181300 Sobic006G274500--Sobic009G181300 Sobic003G385500 Sobic003G385500 Sobic006G274500--Sobic003G385500 Sobic003G253200 Sobic003G253200 Sobic006G274500--Sobic003G253200 Sobic006G274500--Sobic004G209500 Sobic003G003000 Sobic003G003000 Sobic006G274500--Sobic003G003000 Sobic001G331000 Sobic001G331000 Sobic006G274500--Sobic001G331000 Sobic003G016400 Sobic003G016400 Sobic006G274500--Sobic003G016400 Sobic008G008300 Sobic008G008300 Sobic006G274500--Sobic008G008300 Sobic003G118900--Sobic003G008300 Sobic007G131800 Sobic007G131800 Sobic003G118900--Sobic007G131800 Sobic003G118900--Sobic001G513100 Sobic003G118900--Sobic006G166700 Sobic010G087200 Sobic010G087200 Sobic003G118900--Sobic010G087200 Sobic001G020500 Sobic001G020500 Sobic003G118900--Sobic001G020500 Sobic002G001300 Sobic002G001300 Sobic003G118900--Sobic002G001300 Sobic002G366700 Sobic002G366700 Sobic003G118900--Sobic002G366700 Sobic002G339400 Sobic002G339400 Sobic003G118900--Sobic002G339400
Octagon: transcription factors


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