Gene annotation
Transcriptome id Sobic.006G008200.25,Sobic.006G008200.9,Sobic.006G008200.17,Sobic.006G008200.20,Sobic.006G008200.11,Sobic.006G008200.19,Sobic.006G008200.3,Sobic.006G008200.1,Sobic.006G008200.22,Sobic.006G008200.14,Sobic.006G008200.12,Sobic.006G008200.2,Sobic.006G008200.16,Sobic.006G008200.7,Sobic.006G008200.8,Sobic.006G008200.6,Sobic.006G008200.4,Sobic.006G008200.24,Sobic.006G008200.23,Sobic.006G008200.10,Sobic.006G008200.13,Sobic.006G008200.5,Sobic.006G008200.21,Sobic.006G008200.18,Sobic.006G008200.15
Synonym PMM, ATPMM, Sb06g000840
Functional annotation phosphomannomutase, putative, expressed
UniProt A0A1B6PJD3 , A0A1Z5RBG3 , A0A1Z5RCC2 , A0A1Z5RBJ3 , A0A1Z5RBC9 , A0A1Z5RBD9 , A0A1Z5RBL0 , A0A1Z5RBF1 , A0A1Z5RC74 , A0A1Z5RBD7 , A0A1Z5RBX7 , A0A1Z5RBE6 , A0A1Z5RCH8 , A0A1Z5RCG0 , A0A1Z5RBW7 , A0A1Z5RBG2 , A0A1Z5RBD4 , A0A1Z5RCB3 , A0A1Z5RCA3 , A0A1Z5RC85
Pfam PF03332
Panther DB PTHR10466
NCBI CDD KOG3189; Phosphomannomutase
KEGG Orthology -
Gene Ontology GO:0009298; GDP-mannose biosynthetic process GO:0005737cytoplasm GO:0004615phosphomannomutase activity GO:0004615phosphomannomutase activity GO:0005737cytoplasm GO:0009298GDP-mannose biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G45790 : phosphomannomutase
RAP-DB (Rice) LOC_Os04g58580.2,LOC_Os04g58580.1 : phosphomannomutase, putative, expressed
MaizeGDB (Corn) Zm00025a009252
Brachypodium KQJ85349
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G008200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G172600 tetratricopeptide repeat containing protein, putative, expressed -
2 Sobic.009G235300 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K01247: DNA-3-methyladenine glycosylase II
3 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
4 Sobic.003G054100 expressed protein -
5 Sobic.009G228300 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21
6 Sobic.001G293400 zinc finger, C3HC4 type domain containing protein, expressed K10663: E3 ubiquitin-protein ligase ATL4
7 Sobic.004G134500 expressed protein -
8 Sobic.001G150800 expressed protein -
9 Sobic.004G131100 expressed protein -
10 Sobic.002G293900 mitochondrial glycoprotein, putative, expressed -
11 Sobic.007G096200 WD-40 repeat protein family, putative, expressed -
12 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
13 Sobic.009G050100 ATKINESIN-13A/KINESIN-13A, putative, expressed K11091: U1 small nuclear ribonucleoprotein A
14 Sobic.004G161400 protein binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
15 Sobic.002G199100 peptidyl-prolyl cis-trans isomerase, putative, expressed K09579: peptidyl-prolyl cis-trans isomerase NIMA-interacting 4
16 Sobic.001G171500 presenilin, putative, expressed K04505: PSEN1, presenilin 1
17 Sobic.005G076301 - -
18 Sobic.003G226100 expressed protein -
19 Sobic.001G144300 acetyltransferase, GNAT family, putative, expressed -
20 Sobic.010G097400 thiol-disulphide oxidoreductase DCC, putative, expressed -


Gene co-expression network
sample Sobic006G008200 Sobic006G008200 Sobic004G172600 Sobic004G172600 Sobic006G008200--Sobic004G172600 Sobic009G235300 Sobic009G235300 Sobic006G008200--Sobic009G235300 Sobic006G018900 Sobic006G018900 Sobic006G008200--Sobic006G018900 Sobic003G054100 Sobic003G054100 Sobic006G008200--Sobic003G054100 Sobic009G228300 Sobic009G228300 Sobic006G008200--Sobic009G228300 Sobic001G293400 Sobic001G293400 Sobic006G008200--Sobic001G293400 Sobic004G134500 Sobic004G134500 Sobic006G008200--Sobic004G134500 Sobic001G150800 Sobic001G150800 Sobic006G008200--Sobic001G150800 Sobic004G131100 Sobic004G131100 Sobic006G008200--Sobic004G131100 Sobic004G172600--Sobic003G054100 Sobic004G172600--Sobic009G228300 Sobic005G034600 Sobic005G034600 Sobic004G172600--Sobic005G034600 Sobic001G072900 Sobic001G072900 Sobic004G172600--Sobic001G072900 Sobic009G243900 Sobic009G243900 Sobic004G172600--Sobic009G243900 Sobic001G171500 Sobic001G171500 Sobic004G172600--Sobic001G171500 Sobic001G487000 Sobic001G487000 Sobic004G172600--Sobic001G487000 Sobic001G513100 Sobic001G513100 Sobic004G172600--Sobic001G513100 Sobic004G172600--Sobic001G150800 Sobic010G097400 Sobic010G097400 Sobic009G235300--Sobic010G097400 Sobic003G128500 Sobic003G128500 Sobic009G235300--Sobic003G128500 Sobic009G088401 Sobic009G088401 Sobic009G235300--Sobic009G088401 Sobic003G377200 Sobic003G377200 Sobic009G235300--Sobic003G377200 Sobic006G177100 Sobic006G177100 Sobic009G235300--Sobic006G177100 Sobic003G284500 Sobic003G284500 Sobic009G235300--Sobic003G284500 Sobic003G390300 Sobic003G390300 Sobic009G235300--Sobic003G390300 Sobic004G109500 Sobic004G109500 Sobic009G235300--Sobic004G109500 Sobic001G062700 Sobic001G062700 Sobic009G235300--Sobic001G062700 Sobic010G194500 Sobic010G194500 Sobic006G018900--Sobic010G194500 Sobic001G005000 Sobic001G005000 Sobic006G018900--Sobic001G005000 Sobic004G153700 Sobic004G153700 Sobic006G018900--Sobic004G153700 Sobic004G107900 Sobic004G107900 Sobic006G018900--Sobic004G107900 Sobic009G076800 Sobic009G076800 Sobic006G018900--Sobic009G076800 Sobic010G014300 Sobic010G014300 Sobic006G018900--Sobic010G014300 Sobic007G092300 Sobic007G092300 Sobic006G018900--Sobic007G092300 Sobic006G003000 Sobic006G003000 Sobic006G018900--Sobic006G003000 Sobic001G239400 Sobic001G239400 Sobic006G018900--Sobic001G239400 Sobic003G054100--Sobic004G172600 Sobic003G054100--Sobic001G487000 Sobic003G049800 Sobic003G049800 Sobic003G054100--Sobic003G049800 Sobic010G231700 Sobic010G231700 Sobic003G054100--Sobic010G231700 Sobic006G255800 Sobic006G255800 Sobic003G054100--Sobic006G255800 Sobic003G395500 Sobic003G395500 Sobic003G054100--Sobic003G395500 Sobic003G054100--Sobic001G072900 Sobic003G054100--Sobic009G228300 Sobic003G095200 Sobic003G095200 Sobic003G054100--Sobic003G095200 Sobic009G228300--Sobic001G072900 Sobic009G228300--Sobic004G172600 Sobic009G228300--Sobic005G034600 Sobic009G228300--Sobic003G054100 Sobic001G267500 Sobic001G267500 Sobic009G228300--Sobic001G267500 Sobic001G312700 Sobic001G312700 Sobic009G228300--Sobic001G312700 Sobic010G018900 Sobic010G018900 Sobic009G228300--Sobic010G018900 Sobic007G130000 Sobic007G130000 Sobic009G228300--Sobic007G130000 Sobic004G076850 Sobic004G076850 Sobic009G228300--Sobic004G076850 Sobic001G293400--Sobic006G018900 Sobic002G349300 Sobic002G349300 Sobic001G293400--Sobic002G349300 Sobic001G293400--Sobic009G235300 Sobic002G199100 Sobic002G199100 Sobic001G293400--Sobic002G199100 Sobic001G144300 Sobic001G144300 Sobic001G293400--Sobic001G144300 Sobic003G260800 Sobic003G260800 Sobic001G293400--Sobic003G260800 Sobic008G109200 Sobic008G109200 Sobic001G293400--Sobic008G109200 Sobic006G274500 Sobic006G274500 Sobic001G293400--Sobic006G274500 Sobic003G118900 Sobic003G118900 Sobic001G293400--Sobic003G118900 Sobic007G017400 Sobic007G017400 Sobic004G134500--Sobic007G017400 Sobic003G037900 Sobic003G037900 Sobic004G134500--Sobic003G037900 Sobic001G199900 Sobic001G199900 Sobic004G134500--Sobic001G199900 Sobic007G050400 Sobic007G050400 Sobic004G134500--Sobic007G050400 Sobic007G106400 Sobic007G106400 Sobic004G134500--Sobic007G106400 Sobic002G293900 Sobic002G293900 Sobic004G134500--Sobic002G293900 Sobic001G237700 Sobic001G237700 Sobic004G134500--Sobic001G237700 Sobic002G337300 Sobic002G337300 Sobic004G134500--Sobic002G337300 Sobic007G222800 Sobic007G222800 Sobic004G134500--Sobic007G222800 Sobic009G050100 Sobic009G050100 Sobic001G150800--Sobic009G050100 Sobic001G150800--Sobic004G109500 Sobic001G150800--Sobic010G097400 Sobic001G157500 Sobic001G157500 Sobic001G150800--Sobic001G157500 Sobic001G150800--Sobic003G284500 Sobic001G150800--Sobic003G377200 Sobic004G180600 Sobic004G180600 Sobic001G150800--Sobic004G180600 Sobic004G043200 Sobic004G043200 Sobic001G150800--Sobic004G043200 Sobic001G150800--Sobic006G255800 Sobic001G285800 Sobic001G285800 Sobic004G131100--Sobic001G285800 Sobic002G219800 Sobic002G219800 Sobic004G131100--Sobic002G219800 Sobic004G270200 Sobic004G270200 Sobic004G131100--Sobic004G270200 Sobic010G254900 Sobic010G254900 Sobic004G131100--Sobic010G254900 Sobic005G154700 Sobic005G154700 Sobic004G131100--Sobic005G154700 Sobic002G098701 Sobic002G098701 Sobic004G131100--Sobic002G098701 Sobic004G131100--Sobic004G076850 Sobic004G131100--Sobic003G037900 Sobic004G026100 Sobic004G026100 Sobic004G131100--Sobic004G026100
Octagon: transcription factors


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