Gene annotation
Transcriptome id Sobic.001G335100.1
Synonym Sb01g032350
Functional annotation OsFBX125 - F-box domain containing protein, expressed
UniProt C5WWJ0
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G59200 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os04g13160.1 : OsFBD9 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium PNT72328 , KQK08602 , KQK07176 , KQK07177 , PNT72329 , KQK07175
Barley HORVU4Hr1G021110.1 , HORVU4Hr1G021120.1 , HORVU2Hr1G009570.1
Wheat TraesCS3B02G086300 , TraesCS3B02G086300 , TraesCS3B02G502700 , TraesCS3B02G500200 , TraesCS3B02G500200 , TraesCS4A02G086200 , TraesCS3A02G072000 , TraesCS4D02G113200 , TraesCS4B02G119000 , TraesCS4B02G119100 , TraesCS4A02G195900 , TraesCS3D02G071900 , TraesCS2D02G019000 , TraesCS4B02G115500 , TraesCS4A02G199900 , TraesCS3B02G502200 , TraesCS4D02G117300 , TraesCS3B02G500200 , TraesCS6D02G271700 , TraesCS4D02G117200 , TraesCS4D02G059800 , TraesCS5A02G065700 , TraesCS3D02G453400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G177100 expressed protein -
2 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
3 Sobic.009G026650 - -
4 Sobic.002G230800 expressed protein -
5 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
6 Sobic.006G221300 expressed protein -
7 Sobic.007G036000 expressed protein -
8 Sobic.003G259300 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
9 Sobic.004G282601 - -
10 Sobic.007G162400 ABC-2 type transporter domain containing protein, expressed -
11 Sobic.007G218100 transmembrane receptor, putative, expressed -
12 Sobic.008G159901 - K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
13 Sobic.002G158500 ankyrin, putative, expressed -
14 Sobic.002G341300 expressed protein -
15 Sobic.005G021700 EMB1379, putative, expressed -
16 Sobic.005G153000 agenet domain containing protein, expressed -
17 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
18 Sobic.002G351100 DNA repair protein Rad51, putative, expressed K04482: DNA repair protein RAD51
19 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
20 Sobic.009G225700 glutamate synthase, chloroplast precursor, putative, expressed K00264: glutamate synthase (NADH)


Gene co-expression network
sample Sobic001G335100 Sobic001G335100 Sobic010G177100 Sobic010G177100 Sobic001G335100--Sobic010G177100 Sobic001G054700 Sobic001G054700 Sobic001G335100--Sobic001G054700 Sobic009G026650 Sobic009G026650 Sobic001G335100--Sobic009G026650 Sobic002G230800 Sobic002G230800 Sobic001G335100--Sobic002G230800 Sobic003G244000 Sobic003G244000 Sobic001G335100--Sobic003G244000 Sobic006G221300 Sobic006G221300 Sobic001G335100--Sobic006G221300 Sobic007G036000 Sobic007G036000 Sobic001G335100--Sobic007G036000 Sobic003G259300 Sobic003G259300 Sobic001G335100--Sobic003G259300 Sobic004G282601 Sobic004G282601 Sobic001G335100--Sobic004G282601 Sobic001G460100 Sobic001G460100 Sobic010G177100--Sobic001G460100 Sobic010G177100--Sobic003G259300 Sobic010G079100 Sobic010G079100 Sobic010G177100--Sobic010G079100 Sobic003G024000 Sobic003G024000 Sobic010G177100--Sobic003G024000 Sobic005G157300 Sobic005G157300 Sobic010G177100--Sobic005G157300 Sobic001G425700 Sobic001G425700 Sobic010G177100--Sobic001G425700 Sobic007G050800 Sobic007G050800 Sobic010G177100--Sobic007G050800 Sobic003G412800 Sobic003G412800 Sobic010G177100--Sobic003G412800 Sobic009G225500 Sobic009G225500 Sobic010G177100--Sobic009G225500 Sobic001G054700--Sobic006G221300 Sobic009G077300 Sobic009G077300 Sobic001G054700--Sobic009G077300 Sobic004G108400 Sobic004G108400 Sobic001G054700--Sobic004G108400 Sobic009G143200 Sobic009G143200 Sobic001G054700--Sobic009G143200 Sobic002G050700 Sobic002G050700 Sobic001G054700--Sobic002G050700 Sobic006G124400 Sobic006G124400 Sobic001G054700--Sobic006G124400 Sobic009G127800 Sobic009G127800 Sobic001G054700--Sobic009G127800 Sobic005G153000 Sobic005G153000 Sobic001G054700--Sobic005G153000 Sobic006G221800 Sobic006G221800 Sobic001G054700--Sobic006G221800 Sobic001G468000 Sobic001G468000 Sobic009G026650--Sobic001G468000 Sobic001G101700 Sobic001G101700 Sobic009G026650--Sobic001G101700 Sobic006G272800 Sobic006G272800 Sobic009G026650--Sobic006G272800 Sobic009G026650--Sobic006G221300 Sobic009G026650--Sobic009G225500 Sobic003G345000 Sobic003G345000 Sobic009G026650--Sobic003G345000 Sobic002G279400 Sobic002G279400 Sobic009G026650--Sobic002G279400 Sobic002G274500 Sobic002G274500 Sobic009G026650--Sobic002G274500 Sobic004G162900 Sobic004G162900 Sobic009G026650--Sobic004G162900 Sobic001G238900 Sobic001G238900 Sobic002G230800--Sobic001G238900 Sobic010G105400 Sobic010G105400 Sobic002G230800--Sobic010G105400 Sobic002G230800--Sobic006G124400 Sobic002G230800--Sobic001G054700 Sobic003G179500 Sobic003G179500 Sobic002G230800--Sobic003G179500 Sobic009G109300 Sobic009G109300 Sobic002G230800--Sobic009G109300 Sobic007G218100 Sobic007G218100 Sobic002G230800--Sobic007G218100 Sobic002G246900 Sobic002G246900 Sobic002G230800--Sobic002G246900 Sobic002G230800--Sobic003G244000 Sobic003G244000--Sobic001G238900 Sobic003G244000--Sobic001G054700 Sobic007G201900 Sobic007G201900 Sobic003G244000--Sobic007G201900 Sobic003G244000--Sobic002G230800 Sobic002G351100 Sobic002G351100 Sobic003G244000--Sobic002G351100 Sobic001G118800 Sobic001G118800 Sobic003G244000--Sobic001G118800 Sobic003G244000--Sobic009G143200 Sobic003G244000--Sobic005G157300 Sobic004G317000 Sobic004G317000 Sobic003G244000--Sobic004G317000 Sobic006G221300--Sobic009G127800 Sobic006G221300--Sobic001G054700 Sobic006G221300--Sobic009G077300 Sobic006G221300--Sobic005G153000 Sobic006G221300--Sobic009G143200 Sobic006G221300--Sobic004G108400 Sobic004G052200 Sobic004G052200 Sobic006G221300--Sobic004G052200 Sobic006G221300--Sobic009G225500 Sobic008G052300 Sobic008G052300 Sobic006G221300--Sobic008G052300 Sobic007G036000--Sobic004G052200 Sobic007G036000--Sobic009G143200 Sobic001G104500 Sobic001G104500 Sobic007G036000--Sobic001G104500 Sobic007G036000--Sobic004G282601 Sobic007G036000--Sobic004G317000 Sobic010G037901 Sobic010G037901 Sobic007G036000--Sobic010G037901 Sobic007G036000--Sobic009G077300 Sobic007G036000--Sobic005G153000 Sobic007G036000--Sobic002G230800 Sobic003G259300--Sobic001G425700 Sobic003G259300--Sobic009G225500 Sobic002G006100 Sobic002G006100 Sobic003G259300--Sobic002G006100 Sobic003G259300--Sobic009G127800 Sobic003G259300--Sobic006G272800 Sobic003G259300--Sobic005G153000 Sobic003G259300--Sobic001G054700 Sobic004G234500 Sobic004G234500 Sobic003G259300--Sobic004G234500 Sobic003G226700 Sobic003G226700 Sobic003G259300--Sobic003G226700 Sobic004G282601--Sobic005G153000 Sobic004G282601--Sobic001G104500 Sobic004G282601--Sobic010G037901 Sobic004G282601--Sobic009G077300 Sobic009G002200 Sobic009G002200 Sobic004G282601--Sobic009G002200 Sobic007G187700 Sobic007G187700 Sobic004G282601--Sobic007G187700 Sobic003G290400 Sobic003G290400 Sobic004G282601--Sobic003G290400 Sobic004G282601--Sobic006G221300 Sobic005G196600 Sobic005G196600 Sobic004G282601--Sobic005G196600
Octagon: transcription factors


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