Gene annotation
Transcriptome id Sobic.001G342800.3,Sobic.001G342800.5,Sobic.001G342800.4,Sobic.001G342800.6,Sobic.001G342800.1,Sobic.001G342800.2
Synonym
Functional annotation -
UniProt A0A1Z5S931 , A0A1B6QMP3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G342800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G211000 DUF581 domain containing protein, expressed -
2 Sobic.009G029001 - -
3 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
4 Sobic.002G030500 Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed -
5 Sobic.006G164300 YELLOW STRIPE like 2(PubMedID : 26465154)@- -
6 Sobic.010G004701 - -
7 Sobic.004G097000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@F-box family protein, putative, expressed -
8 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
9 Sobic.007G053800 RNA polymerase sigma factor, putative, expressed K03086: RNA polymerase primary sigma factor
10 Sobic.005G015200 Phototropic-responsive NPH3 family protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
11 Sobic.005G183400 resistance protein, putative, expressed -
12 Sobic.006G151600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 3, putative, expressed -
13 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
14 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
15 Sobic.005G163866 - -
16 Sobic.004G051100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
17 Sobic.006G165600 - -
18 Sobic.003G392700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
19 Sobic.001G391900 nifU, putative, expressed -
20 Sobic.001G417200 ATP synthase B chain, chloroplast precursor, putative, expressed K02109: ATPF0B, F-type H+-transporting ATPase subunit b


Gene co-expression network
sample Sobic001G342800 Sobic001G342800 Sobic002G211000 Sobic002G211000 Sobic001G342800--Sobic002G211000 Sobic009G029001 Sobic009G029001 Sobic001G342800--Sobic009G029001 Sobic006G123500 Sobic006G123500 Sobic001G342800--Sobic006G123500 Sobic002G030500 Sobic002G030500 Sobic001G342800--Sobic002G030500 Sobic006G164300 Sobic006G164300 Sobic001G342800--Sobic006G164300 Sobic010G004701 Sobic010G004701 Sobic001G342800--Sobic010G004701 Sobic004G097000 Sobic004G097000 Sobic001G342800--Sobic004G097000 Sobic003G209900 Sobic003G209900 Sobic001G342800--Sobic003G209900 Sobic007G053800 Sobic007G053800 Sobic001G342800--Sobic007G053800 Sobic004G051100 Sobic004G051100 Sobic002G211000--Sobic004G051100 Sobic007G034300 Sobic007G034300 Sobic002G211000--Sobic007G034300 Sobic010G245200 Sobic010G245200 Sobic002G211000--Sobic010G245200 Sobic002G211000--Sobic007G053800 Sobic001G517700 Sobic001G517700 Sobic002G211000--Sobic001G517700 Sobic008G053200 Sobic008G053200 Sobic002G211000--Sobic008G053200 Sobic005G183400 Sobic005G183400 Sobic002G211000--Sobic005G183400 Sobic006G188000 Sobic006G188000 Sobic002G211000--Sobic006G188000 Sobic005G165500 Sobic005G165500 Sobic002G211000--Sobic005G165500 Sobic009G029001--Sobic002G211000 Sobic007G207800 Sobic007G207800 Sobic009G029001--Sobic007G207800 Sobic009G029001--Sobic005G183400 Sobic001G242600 Sobic001G242600 Sobic009G029001--Sobic001G242600 Sobic004G227200 Sobic004G227200 Sobic009G029001--Sobic004G227200 Sobic007G223500 Sobic007G223500 Sobic009G029001--Sobic007G223500 Sobic004G132600 Sobic004G132600 Sobic009G029001--Sobic004G132600 Sobic009G029001--Sobic001G517700 Sobic009G029001--Sobic007G053800 Sobic004G268500 Sobic004G268500 Sobic006G123500--Sobic004G268500 Sobic001G404500 Sobic001G404500 Sobic006G123500--Sobic001G404500 Sobic004G099700 Sobic004G099700 Sobic006G123500--Sobic004G099700 Sobic005G187900 Sobic005G187900 Sobic006G123500--Sobic005G187900 Sobic003G284800 Sobic003G284800 Sobic006G123500--Sobic003G284800 Sobic002G046900 Sobic002G046900 Sobic006G123500--Sobic002G046900 Sobic004G063200 Sobic004G063200 Sobic006G123500--Sobic004G063200 Sobic008G065200 Sobic008G065200 Sobic006G123500--Sobic008G065200 Sobic002G001900 Sobic002G001900 Sobic006G123500--Sobic002G001900 Sobic002G030500--Sobic007G207800 Sobic008G066100 Sobic008G066100 Sobic002G030500--Sobic008G066100 Sobic002G030500--Sobic007G223500 Sobic002G316700 Sobic002G316700 Sobic002G030500--Sobic002G316700 Sobic007G071500 Sobic007G071500 Sobic002G030500--Sobic007G071500 Sobic003G359100 Sobic003G359100 Sobic002G030500--Sobic003G359100 Sobic008G134800 Sobic008G134800 Sobic002G030500--Sobic008G134800 Sobic006G093900 Sobic006G093900 Sobic002G030500--Sobic006G093900 Sobic003G435800 Sobic003G435800 Sobic002G030500--Sobic003G435800 Sobic001G525900 Sobic001G525900 Sobic006G164300--Sobic001G525900 Sobic006G164300--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic006G164300--Sobic005G203300 Sobic006G164300--Sobic002G046900 Sobic006G164300--Sobic004G099700 Sobic002G281000 Sobic002G281000 Sobic006G164300--Sobic002G281000 Sobic009G202400 Sobic009G202400 Sobic006G164300--Sobic009G202400 Sobic003G410900 Sobic003G410900 Sobic006G164300--Sobic003G410900 Sobic005G175600 Sobic005G175600 Sobic006G164300--Sobic005G175600 Sobic010G004600 Sobic010G004600 Sobic010G004701--Sobic010G004600 Sobic010G004701--Sobic006G123500 Sobic004G122100 Sobic004G122100 Sobic010G004701--Sobic004G122100 Sobic003G080800 Sobic003G080800 Sobic010G004701--Sobic003G080800 Sobic010G004701--Sobic001G342800 Sobic005G175500 Sobic005G175500 Sobic010G004701--Sobic005G175500 Sobic006G165600 Sobic006G165600 Sobic010G004701--Sobic006G165600 Sobic002G115100 Sobic002G115100 Sobic010G004701--Sobic002G115100 Sobic003G096500 Sobic003G096500 Sobic010G004701--Sobic003G096500 Sobic004G097000--Sobic002G211000 Sobic001G317400 Sobic001G317400 Sobic004G097000--Sobic001G317400 Sobic004G097000--Sobic007G034300 Sobic008G026800 Sobic008G026800 Sobic004G097000--Sobic008G026800 Sobic004G097000--Sobic008G053200 Sobic002G036000 Sobic002G036000 Sobic004G097000--Sobic002G036000 Sobic004G097000--Sobic005G165500 Sobic004G097000--Sobic001G242600 Sobic002G403600 Sobic002G403600 Sobic004G097000--Sobic002G403600 Sobic008G063500 Sobic008G063500 Sobic003G209900--Sobic008G063500 Sobic004G056900 Sobic004G056900 Sobic003G209900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic003G209900--Sobic007G136900 Sobic001G177000 Sobic001G177000 Sobic003G209900--Sobic001G177000 Sobic003G209900--Sobic002G316700 Sobic002G242000 Sobic002G242000 Sobic003G209900--Sobic002G242000 Sobic001G070500 Sobic001G070500 Sobic003G209900--Sobic001G070500 Sobic001G046900 Sobic001G046900 Sobic003G209900--Sobic001G046900 Sobic003G052500 Sobic003G052500 Sobic003G209900--Sobic003G052500 Sobic007G053800--Sobic010G245200 Sobic006G265900 Sobic006G265900 Sobic007G053800--Sobic006G265900 Sobic003G431700 Sobic003G431700 Sobic007G053800--Sobic003G431700 Sobic001G128600 Sobic001G128600 Sobic007G053800--Sobic001G128600 Sobic001G122300 Sobic001G122300 Sobic007G053800--Sobic001G122300 Sobic001G500700 Sobic001G500700 Sobic007G053800--Sobic001G500700 Sobic002G370600 Sobic002G370600 Sobic007G053800--Sobic002G370600 Sobic003G148200 Sobic003G148200 Sobic007G053800--Sobic003G148200 Sobic007G053800--Sobic006G188000
Octagon: transcription factors


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