Gene annotation
Transcriptome id Sobic.001G422100.1
Synonym Sb01g039680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
haloacid dehalogenase-like hydrolase family protein, putative, expressed
UniProt C5WQ06
Pfam PF13419
Panther DB PTHR12725 PTHR12725:SF72
NCBI CDD KOG3109; Haloacid dehalogenase-like hydrolase
KEGG Orthology K07025; putative hydrolase of the HAD superfamily
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02230 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os03g16670.1 : haloacid dehalogenase-like hydrolase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001821 , Zm00025a052764
Brachypodium KQK22350 , KQK15039 , KQK22348 , KQK22349 , KQK15040
Barley HORVU2Hr1G027680.10 , HORVU4Hr1G059860.4 , HORVU4Hr1G059860.2 , HORVU4Hr1G059860.3 , HORVU4Hr1G059860.1 , HORVU2Hr1G027680.9 , HORVU2Hr1G027680.8 , HORVU2Hr1G027680.1 , HORVU2Hr1G027680.3 , HORVU2Hr1G027680.2 , HORVU2Hr1G027680.5 , HORVU2Hr1G027680.4 , HORVU2Hr1G027680.6
Wheat TraesCS2A02G153300 , TraesCS2B02G178400 , TraesCS2B02G178400 , TraesCS4A02G096500 , TraesCS4D02G208800 , TraesCS4D02G208800 , TraesCS2D02G158600 , TraesCS2A02G153300 , TraesCS4B02G207900 , TraesCS4B02G207900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133800 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
2 Sobic.001G022800 actin, putative, expressed K10355: actin, other eukaryote
3 Sobic.002G290400 Protein kinase superfamily protein(PubMedID : 26465154)@serine/threonine-protein kinase SRPK1, putative, expressed -
4 Sobic.007G136100 uncharacterized protein family UPF0016 domain containing protein, expressed -
5 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
6 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
7 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
8 Sobic.004G057200 cytoplasmic membrane protein, putative, expressed -
9 Sobic.001G185500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
11 Sobic.004G329300 leucine aminopeptidase, chloroplast precursor, putative, expressed K01255: CARP, leucyl aminopeptidase
12 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
13 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
15 Sobic.009G129800 endo-1,3@1,4-beta-D-glucanase precursor, putative, expressed -
16 Sobic.003G152800 cyclase/dehydrase family protein, expressed -
17 Sobic.010G027000 enolase, putative, expressed K01689: ENO, enolase
18 Sobic.002G217400 HD domain containing protein, putative, expressed -
19 Sobic.004G312300 expressed protein -
20 Sobic.010G074300 smr domain containing protein, expressed -


Gene co-expression network
sample Sobic001G422100 Sobic001G422100 Sobic002G133800 Sobic002G133800 Sobic001G422100--Sobic002G133800 Sobic001G022800 Sobic001G022800 Sobic001G422100--Sobic001G022800 Sobic002G290400 Sobic002G290400 Sobic001G422100--Sobic002G290400 Sobic007G136100 Sobic007G136100 Sobic001G422100--Sobic007G136100 Sobic009G005900 Sobic009G005900 Sobic001G422100--Sobic009G005900 Sobic004G080100 Sobic004G080100 Sobic001G422100--Sobic004G080100 Sobic010G049100 Sobic010G049100 Sobic001G422100--Sobic010G049100 Sobic004G057200 Sobic004G057200 Sobic001G422100--Sobic004G057200 Sobic001G185500 Sobic001G185500 Sobic001G422100--Sobic001G185500 Sobic002G133800--Sobic004G057200 Sobic005G133900 Sobic005G133900 Sobic002G133800--Sobic005G133900 Sobic002G133800--Sobic001G422100 Sobic007G114200 Sobic007G114200 Sobic002G133800--Sobic007G114200 Sobic002G133800--Sobic007G136100 Sobic002G363100 Sobic002G363100 Sobic002G133800--Sobic002G363100 Sobic001G236300 Sobic001G236300 Sobic002G133800--Sobic001G236300 Sobic009G257600 Sobic009G257600 Sobic002G133800--Sobic009G257600 Sobic001G283200 Sobic001G283200 Sobic002G133800--Sobic001G283200 Sobic001G022800--Sobic001G283200 Sobic004G275700 Sobic004G275700 Sobic001G022800--Sobic004G275700 Sobic004G132300 Sobic004G132300 Sobic001G022800--Sobic004G132300 Sobic009G249100 Sobic009G249100 Sobic001G022800--Sobic009G249100 Sobic003G261400 Sobic003G261400 Sobic001G022800--Sobic003G261400 Sobic001G109300 Sobic001G109300 Sobic001G022800--Sobic001G109300 Sobic001G022800--Sobic007G136100 Sobic002G226900 Sobic002G226900 Sobic001G022800--Sobic002G226900 Sobic001G022800--Sobic009G005900 Sobic006G209400 Sobic006G209400 Sobic002G290400--Sobic006G209400 Sobic003G076500 Sobic003G076500 Sobic002G290400--Sobic003G076500 Sobic010G251300 Sobic010G251300 Sobic002G290400--Sobic010G251300 Sobic003G309200 Sobic003G309200 Sobic002G290400--Sobic003G309200 Sobic001G414500 Sobic001G414500 Sobic002G290400--Sobic001G414500 Sobic008G089900 Sobic008G089900 Sobic002G290400--Sobic008G089900 Sobic006G092400 Sobic006G092400 Sobic002G290400--Sobic006G092400 Sobic004G118200 Sobic004G118200 Sobic002G290400--Sobic004G118200 Sobic010G230500 Sobic010G230500 Sobic002G290400--Sobic010G230500 Sobic007G136100--Sobic001G283200 Sobic010G193900 Sobic010G193900 Sobic007G136100--Sobic010G193900 Sobic003G055700 Sobic003G055700 Sobic007G136100--Sobic003G055700 Sobic007G136100--Sobic003G261400 Sobic003G372000 Sobic003G372000 Sobic007G136100--Sobic003G372000 Sobic004G081800 Sobic004G081800 Sobic007G136100--Sobic004G081800 Sobic003G261500 Sobic003G261500 Sobic007G136100--Sobic003G261500 Sobic006G176600 Sobic006G176600 Sobic007G136100--Sobic006G176600 Sobic001G049200 Sobic001G049200 Sobic007G136100--Sobic001G049200 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic004G321900 Sobic004G321900 Sobic009G005900--Sobic004G321900 Sobic001G433400 Sobic001G433400 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic004G080100--Sobic010G049100 Sobic004G067100 Sobic004G067100 Sobic004G080100--Sobic004G067100 Sobic003G246700 Sobic003G246700 Sobic004G080100--Sobic003G246700 Sobic004G080100--Sobic002G226900 Sobic001G219300 Sobic001G219300 Sobic004G080100--Sobic001G219300 Sobic008G032600 Sobic008G032600 Sobic004G080100--Sobic008G032600 Sobic003G139800 Sobic003G139800 Sobic004G080100--Sobic003G139800 Sobic008G179900 Sobic008G179900 Sobic004G080100--Sobic008G179900 Sobic004G080100--Sobic008G089900 Sobic010G049100--Sobic004G080100 Sobic010G049100--Sobic003G246700 Sobic001G014800 Sobic001G014800 Sobic010G049100--Sobic001G014800 Sobic010G049100--Sobic008G032600 Sobic004G121300 Sobic004G121300 Sobic010G049100--Sobic004G121300 Sobic010G049100--Sobic002G226900 Sobic004G296400 Sobic004G296400 Sobic010G049100--Sobic004G296400 Sobic009G139900 Sobic009G139900 Sobic010G049100--Sobic009G139900 Sobic004G136300 Sobic004G136300 Sobic010G049100--Sobic004G136300 Sobic004G057200--Sobic002G133800 Sobic004G057200--Sobic005G133900 Sobic001G357300 Sobic001G357300 Sobic004G057200--Sobic001G357300 Sobic004G057200--Sobic002G363100 Sobic004G057200--Sobic007G114200 Sobic007G137600 Sobic007G137600 Sobic004G057200--Sobic007G137600 Sobic003G367451 Sobic003G367451 Sobic004G057200--Sobic003G367451 Sobic010G188100 Sobic010G188100 Sobic004G057200--Sobic010G188100 Sobic006G261300 Sobic006G261300 Sobic004G057200--Sobic006G261300 Sobic003G228100 Sobic003G228100 Sobic001G185500--Sobic003G228100 Sobic010G116400 Sobic010G116400 Sobic001G185500--Sobic010G116400 Sobic001G070000 Sobic001G070000 Sobic001G185500--Sobic001G070000 Sobic001G103200 Sobic001G103200 Sobic001G185500--Sobic001G103200 Sobic003G098000 Sobic003G098000 Sobic001G185500--Sobic003G098000 Sobic001G541100 Sobic001G541100 Sobic001G185500--Sobic001G541100 Sobic001G158500 Sobic001G158500 Sobic001G185500--Sobic001G158500 Sobic004G102400 Sobic004G102400 Sobic001G185500--Sobic004G102400 Sobic002G375300 Sobic002G375300 Sobic001G185500--Sobic002G375300
Octagon: transcription factors


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