Gene annotation
Transcriptome id Sobic.003G152800.1
Synonym Sb03g013280
Functional annotation cyclase/dehydrase family protein, expressed
UniProt C5XIY8
Pfam PF03364
Panther DB PTHR33824 PTHR33824:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02475 : Polyketide cyclase/dehydrase and lipid transport superfamily protein
RAP-DB (Rice) LOC_Os01g22510.1 : cyclase/dehydrase family protein, expressed
MaizeGDB (Corn) Zm00025a024391
Brachypodium KQK04199
Barley -
Wheat TraesCS3D02G267600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G116400 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
2 Sobic.004G080100 fumarylacetoacetase, putative, expressed K01555: FAH, fumarylacetoacetase
3 Sobic.003G246700 iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed -
4 Sobic.002G111200 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
5 Sobic.008G032600 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
6 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
7 Sobic.001G219300 lactate/malate dehydrogenase, putative, expressed K00025: malate dehydrogenase
8 Sobic.001G048200 elongation factor P, putative, expressed -
9 Sobic.002G230100 carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
10 Sobic.003G098000 armadillo/beta-catenin repeat family protein, putative, expressed K08332: vacuolar protein 8
11 Sobic.004G295300 expressed protein -
12 Sobic.003G055700 saposin-like type B, region 1 family protein, putative, expressed K12382: PSAP, saposin
13 Sobic.002G226400 EF hand family protein, putative, expressed -
14 Sobic.010G251000 ubiquitin-conjugating enzyme, putative, expressed K10579: UBE2M, ubiquitin-conjugating enzyme E2 M
15 Sobic.002G226900 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed K07119: PTGR3, prostaglandin reductase 3
16 Sobic.002G116900 expressed protein -
17 Sobic.003G117900 protein kinase, putative, expressed -
18 Sobic.001G056601 - K01695: tryptophan synthase alpha chain
19 Sobic.001G070000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@actin-depolymerizing factor, putative, expressed K05765: cofilin
20 Sobic.007G171400 low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed K01104: protein-tyrosine phosphatase


Gene co-expression network
sample Sobic003G152800 Sobic003G152800 Sobic010G116400 Sobic010G116400 Sobic003G152800--Sobic010G116400 Sobic004G080100 Sobic004G080100 Sobic003G152800--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic003G152800--Sobic003G246700 Sobic002G111200 Sobic002G111200 Sobic003G152800--Sobic002G111200 Sobic008G032600 Sobic008G032600 Sobic003G152800--Sobic008G032600 Sobic010G049100 Sobic010G049100 Sobic003G152800--Sobic010G049100 Sobic001G219300 Sobic001G219300 Sobic003G152800--Sobic001G219300 Sobic001G048200 Sobic001G048200 Sobic003G152800--Sobic001G048200 Sobic002G230100 Sobic002G230100 Sobic003G152800--Sobic002G230100 Sobic001G070000 Sobic001G070000 Sobic010G116400--Sobic001G070000 Sobic006G209400 Sobic006G209400 Sobic010G116400--Sobic006G209400 Sobic009G217100 Sobic009G217100 Sobic010G116400--Sobic009G217100 Sobic002G130800 Sobic002G130800 Sobic010G116400--Sobic002G130800 Sobic003G117900 Sobic003G117900 Sobic010G116400--Sobic003G117900 Sobic001G185500 Sobic001G185500 Sobic010G116400--Sobic001G185500 Sobic002G375300 Sobic002G375300 Sobic010G116400--Sobic002G375300 Sobic006G092400 Sobic006G092400 Sobic010G116400--Sobic006G092400 Sobic010G251000 Sobic010G251000 Sobic010G116400--Sobic010G251000 Sobic004G080100--Sobic010G049100 Sobic004G067100 Sobic004G067100 Sobic004G080100--Sobic004G067100 Sobic004G080100--Sobic003G246700 Sobic002G226900 Sobic002G226900 Sobic004G080100--Sobic002G226900 Sobic004G080100--Sobic001G219300 Sobic004G080100--Sobic008G032600 Sobic003G139800 Sobic003G139800 Sobic004G080100--Sobic003G139800 Sobic008G179900 Sobic008G179900 Sobic004G080100--Sobic008G179900 Sobic008G089900 Sobic008G089900 Sobic004G080100--Sobic008G089900 Sobic003G246700--Sobic004G067100 Sobic003G246700--Sobic004G080100 Sobic003G246700--Sobic010G049100 Sobic007G068900 Sobic007G068900 Sobic003G246700--Sobic007G068900 Sobic010G000900 Sobic010G000900 Sobic003G246700--Sobic010G000900 Sobic003G246700--Sobic002G226900 Sobic010G277100 Sobic010G277100 Sobic003G246700--Sobic010G277100 Sobic007G216100 Sobic007G216100 Sobic003G246700--Sobic007G216100 Sobic003G246700--Sobic003G117900 Sobic001G339500 Sobic001G339500 Sobic002G111200--Sobic001G339500 Sobic001G014800 Sobic001G014800 Sobic002G111200--Sobic001G014800 Sobic002G111200--Sobic001G219300 Sobic002G339600 Sobic002G339600 Sobic002G111200--Sobic002G339600 Sobic002G111200--Sobic010G277100 Sobic008G118900 Sobic008G118900 Sobic002G111200--Sobic008G118900 Sobic002G309900 Sobic002G309900 Sobic002G111200--Sobic002G309900 Sobic002G209400 Sobic002G209400 Sobic002G111200--Sobic002G209400 Sobic009G004600 Sobic009G004600 Sobic002G111200--Sobic009G004600 Sobic008G032600--Sobic010G049100 Sobic008G156700 Sobic008G156700 Sobic008G032600--Sobic008G156700 Sobic008G032600--Sobic004G080100 Sobic009G133600 Sobic009G133600 Sobic008G032600--Sobic009G133600 Sobic005G168600 Sobic005G168600 Sobic008G032600--Sobic005G168600 Sobic003G110400 Sobic003G110400 Sobic008G032600--Sobic003G110400 Sobic003G055700 Sobic003G055700 Sobic008G032600--Sobic003G055700 Sobic006G244700 Sobic006G244700 Sobic008G032600--Sobic006G244700 Sobic008G033500 Sobic008G033500 Sobic008G032600--Sobic008G033500 Sobic010G049100--Sobic004G080100 Sobic010G049100--Sobic003G246700 Sobic010G049100--Sobic001G014800 Sobic010G049100--Sobic008G032600 Sobic004G121300 Sobic004G121300 Sobic010G049100--Sobic004G121300 Sobic010G049100--Sobic002G226900 Sobic004G296400 Sobic004G296400 Sobic010G049100--Sobic004G296400 Sobic009G139900 Sobic009G139900 Sobic010G049100--Sobic009G139900 Sobic004G136300 Sobic004G136300 Sobic010G049100--Sobic004G136300 Sobic001G219300--Sobic002G111200 Sobic001G219300--Sobic004G080100 Sobic001G219300--Sobic003G055700 Sobic001G219300--Sobic010G049100 Sobic009G257600 Sobic009G257600 Sobic001G219300--Sobic009G257600 Sobic001G219300--Sobic001G014800 Sobic009G005900 Sobic009G005900 Sobic001G219300--Sobic009G005900 Sobic001G219300--Sobic006G244700 Sobic001G219300--Sobic008G032600 Sobic001G048200--Sobic006G244700 Sobic001G048200--Sobic003G055700 Sobic002G116900 Sobic002G116900 Sobic001G048200--Sobic002G116900 Sobic001G048200--Sobic010G049100 Sobic001G048200--Sobic008G032600 Sobic001G048200--Sobic004G080100 Sobic004G040900 Sobic004G040900 Sobic001G048200--Sobic004G040900 Sobic007G188300 Sobic007G188300 Sobic001G048200--Sobic007G188300 Sobic001G468600 Sobic001G468600 Sobic001G048200--Sobic001G468600 Sobic004G053700 Sobic004G053700 Sobic002G230100--Sobic004G053700 Sobic004G183600 Sobic004G183600 Sobic002G230100--Sobic004G183600 Sobic002G399100 Sobic002G399100 Sobic002G230100--Sobic002G399100 Sobic010G153700 Sobic010G153700 Sobic002G230100--Sobic010G153700 Sobic001G270400 Sobic001G270400 Sobic002G230100--Sobic001G270400 Sobic002G230100--Sobic002G116900 Sobic001G056601 Sobic001G056601 Sobic002G230100--Sobic001G056601 Sobic001G137100 Sobic001G137100 Sobic002G230100--Sobic001G137100 Sobic001G383300 Sobic001G383300 Sobic002G230100--Sobic001G383300
Octagon: transcription factors


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