Gene annotation
Transcriptome id Sobic.001G440100.1
Synonym Sb01g041380, ATRAD17, RAD17
Functional annotation cell cycle checkpoint protein RAD17, putative, expressed
UniProt C5WR11
Pfam PF00004
Panther DB PTHR12172
NCBI CDD KOG1970; Checkpoint RAD17-RFC complex, RAD17/RAD24 component
KEGG Orthology K06662; HRAD17, cell cycle checkpoint protein
Gene Ontology GO:0005524; ATP binding GO:0007049cell cycle GO:0006281DNA repair GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G66130 : RADIATION SENSITIVE 17
RAP-DB (Rice) LOC_Os03g13850.1 : cell cycle checkpoint protein RAD17, putative, expressed
MaizeGDB (Corn) Zm00025a052915
Brachypodium KQK22593 , KQK22592 , KQK22591 , PNT77736 , PNT77737 , PNT77735
Barley HORVU4Hr1G063910.9 , HORVU4Hr1G063910.2 , HORVU4Hr1G063910.1 , HORVU4Hr1G063910.7 , HORVU4Hr1G063910.6 , HORVU4Hr1G063910.5 , HORVU4Hr1G063910.4 , HORVU4Hr1G063910.19 , HORVU4Hr1G063910.18 , HORVU4Hr1G063910.13 , HORVU4Hr1G063910.12 , HORVU4Hr1G063910.11 , HORVU4Hr1G063910.10 , HORVU4Hr1G063910.17 , HORVU4Hr1G063910.16 , HORVU4Hr1G063910.15 , HORVU4Hr1G063910.14 , HORVU4Hr1G063910.35 , HORVU4Hr1G063910.34 , HORVU4Hr1G063910.37 , HORVU4Hr1G063910.31 , HORVU4Hr1G063910.30 , HORVU4Hr1G063910.8 , HORVU4Hr1G063910.33 , HORVU4Hr1G063910.39 , HORVU4Hr1G063910.38 , HORVU4Hr1G063910.36 , HORVU4Hr1G063910.32 , HORVU4Hr1G063910.22 , HORVU4Hr1G063910.23 , HORVU4Hr1G063910.20 , HORVU4Hr1G063910.26 , HORVU4Hr1G063910.27 , HORVU4Hr1G063910.24 , HORVU4Hr1G063910.25 , HORVU4Hr1G063910.28 , HORVU4Hr1G063910.29 , HORVU4Hr1G063910.41 , HORVU4Hr1G063910.42 , HORVU4Hr1G063910.43 , HORVU4Hr1G063910.40
Wheat TraesCS4D02G228700 , TraesCS4D02G228700 , TraesCS4D02G228700 , TraesCS4D02G228700 , TraesCS4A02G071900 , TraesCS4A02G071900 , TraesCS4A02G071900 , TraesCS4A02G071900 , TraesCS4A02G071900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G330900 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
2 Sobic.010G038100 OsFBDUF30 - F-box and DUF domain containing protein, expressed -
3 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
4 Sobic.006G112700 ATPOT1, putative, expressed -
5 Sobic.001G239800 3-5 exonuclease family protein, putative, expressed K12591: RRP6, exosome complex exonuclease RRP6
6 Sobic.010G026600 B3 DNA binding domain containing protein, expressed -
7 Sobic.006G236000 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
8 Sobic.003G123100 expressed protein K03352: anaphase-promoting complex subunit 5
9 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
10 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
11 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
12 Sobic.004G198900 expressed protein -
13 Sobic.001G453500 expressed protein -
14 Sobic.004G111000 bromodomain containing protein, expressed -
15 Sobic.004G155600 dnaJ domain containing protein, expressed -
16 Sobic.008G045000 expressed protein -
17 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
18 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
19 Sobic.003G341700 exo70 exocyst complex subunit domain containing protein, expressed -
20 Sobic.003G309050 - -


Gene co-expression network
sample Sobic001G440100 Sobic001G440100 Sobic003G330900 Sobic003G330900 Sobic001G440100--Sobic003G330900 Sobic010G038100 Sobic010G038100 Sobic001G440100--Sobic010G038100 Sobic002G252100 Sobic002G252100 Sobic001G440100--Sobic002G252100 Sobic006G112700 Sobic006G112700 Sobic001G440100--Sobic006G112700 Sobic001G239800 Sobic001G239800 Sobic001G440100--Sobic001G239800 Sobic010G026600 Sobic010G026600 Sobic001G440100--Sobic010G026600 Sobic006G236000 Sobic006G236000 Sobic001G440100--Sobic006G236000 Sobic003G123100 Sobic003G123100 Sobic001G440100--Sobic003G123100 Sobic004G215900 Sobic004G215900 Sobic001G440100--Sobic004G215900 Sobic003G330900--Sobic001G239800 Sobic003G330900--Sobic001G440100 Sobic001G052400 Sobic001G052400 Sobic003G330900--Sobic001G052400 Sobic004G006600 Sobic004G006600 Sobic003G330900--Sobic004G006600 Sobic002G374300 Sobic002G374300 Sobic003G330900--Sobic002G374300 Sobic006G125900 Sobic006G125900 Sobic003G330900--Sobic006G125900 Sobic004G315500 Sobic004G315500 Sobic003G330900--Sobic004G315500 Sobic003G330900--Sobic010G038100 Sobic001G501800 Sobic001G501800 Sobic003G330900--Sobic001G501800 Sobic005G200900 Sobic005G200900 Sobic010G038100--Sobic005G200900 Sobic010G038100--Sobic010G026600 Sobic010G038100--Sobic001G440100 Sobic004G235300 Sobic004G235300 Sobic010G038100--Sobic004G235300 Sobic006G080400 Sobic006G080400 Sobic010G038100--Sobic006G080400 Sobic008G002500 Sobic008G002500 Sobic010G038100--Sobic008G002500 Sobic010G038100--Sobic001G501800 Sobic003G101700 Sobic003G101700 Sobic010G038100--Sobic003G101700 Sobic009G185700 Sobic009G185700 Sobic010G038100--Sobic009G185700 Sobic006G245900 Sobic006G245900 Sobic002G252100--Sobic006G245900 Sobic002G252100--Sobic003G123100 Sobic002G252100--Sobic001G239800 Sobic001G346900 Sobic001G346900 Sobic002G252100--Sobic001G346900 Sobic002G371600 Sobic002G371600 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic001G098400 Sobic001G098400 Sobic002G252100--Sobic001G098400 Sobic002G252100--Sobic004G315500 Sobic007G014800 Sobic007G014800 Sobic002G252100--Sobic007G014800 Sobic008G080500 Sobic008G080500 Sobic006G112700--Sobic008G080500 Sobic003G209400 Sobic003G209400 Sobic006G112700--Sobic003G209400 Sobic006G112700--Sobic001G239800 Sobic006G112700--Sobic006G236000 Sobic009G142000 Sobic009G142000 Sobic006G112700--Sobic009G142000 Sobic010G262100 Sobic010G262100 Sobic006G112700--Sobic010G262100 Sobic006G112700--Sobic003G123100 Sobic008G092800 Sobic008G092800 Sobic006G112700--Sobic008G092800 Sobic001G451300 Sobic001G451300 Sobic006G112700--Sobic001G451300 Sobic001G239800--Sobic006G112700 Sobic001G239800--Sobic003G123100 Sobic002G318800 Sobic002G318800 Sobic001G239800--Sobic002G318800 Sobic001G239800--Sobic003G330900 Sobic001G536000 Sobic001G536000 Sobic001G239800--Sobic001G536000 Sobic001G239800--Sobic002G252100 Sobic001G239800--Sobic007G014800 Sobic001G239800--Sobic006G125900 Sobic001G239800--Sobic004G315500 Sobic008G047300 Sobic008G047300 Sobic010G026600--Sobic008G047300 Sobic010G026600--Sobic006G080400 Sobic010G026600--Sobic005G200900 Sobic002G048700 Sobic002G048700 Sobic010G026600--Sobic002G048700 Sobic010G026600--Sobic008G002500 Sobic004G355800 Sobic004G355800 Sobic010G026600--Sobic004G355800 Sobic010G026600--Sobic010G038100 Sobic004G155600 Sobic004G155600 Sobic010G026600--Sobic004G155600 Sobic009G088000 Sobic009G088000 Sobic010G026600--Sobic009G088000 Sobic006G236000--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic006G236000--Sobic008G068100 Sobic006G236000--Sobic003G123100 Sobic002G043000 Sobic002G043000 Sobic006G236000--Sobic002G043000 Sobic006G236000--Sobic006G112700 Sobic006G181800 Sobic006G181800 Sobic006G236000--Sobic006G181800 Sobic009G191500 Sobic009G191500 Sobic006G236000--Sobic009G191500 Sobic002G003300 Sobic002G003300 Sobic006G236000--Sobic002G003300 Sobic008G111600 Sobic008G111600 Sobic006G236000--Sobic008G111600 Sobic003G123100--Sobic007G014800 Sobic003G123100--Sobic006G236000 Sobic003G123100--Sobic009G142000 Sobic003G123100--Sobic010G262100 Sobic003G123100--Sobic001G239800 Sobic003G123100--Sobic001G451300 Sobic003G123100--Sobic002G252100 Sobic005G010900 Sobic005G010900 Sobic003G123100--Sobic005G010900 Sobic003G123100--Sobic006G112700 Sobic004G215900--Sobic008G068100 Sobic004G215900--Sobic006G236000 Sobic004G215900--Sobic009G191500 Sobic004G215900--Sobic002G003300 Sobic001G024000 Sobic001G024000 Sobic004G215900--Sobic001G024000 Sobic004G215900--Sobic008G111600 Sobic004G038100 Sobic004G038100 Sobic004G215900--Sobic004G038100 Sobic002G112600 Sobic002G112600 Sobic004G215900--Sobic002G112600 Sobic004G215900--Sobic002G043000
Octagon: transcription factors


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