Gene annotation
Transcriptome id Sobic.001G511900.1
Synonym Sb01g047740, NPGR2
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5WYY5
Pfam PF13181 PF13414
Panther DB PTHR23083 PTHR23083:SF409
NCBI CDD KOG4162; Predicted calmodulin-binding protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G28600 : no pollen germination related 2
RAP-DB (Rice) LOC_Os10g33290.2 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006652
Brachypodium -
Barley HORVU4Hr1G080420.8 , HORVU4Hr1G080420.9 , HORVU4Hr1G080420.1 , HORVU4Hr1G080420.2 , HORVU4Hr1G080420.3 , HORVU4Hr1G080420.4 , HORVU4Hr1G080420.5 , HORVU4Hr1G080420.6 , HORVU4Hr1G080420.7 , HORVU1Hr1G040050.1 , HORVU1Hr1G040050.3 , HORVU1Hr1G040050.4 , HORVU1Hr1G040050.6
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G121300 ATP11 protein, expressed K07555: ATPeAF1, ATPAF1, ATP synthase mitochondrial F1 complex assembly factor 1
2 Sobic.008G089900 PQ loop repeat domain containing protein, expressed K12386: cystinosin
3 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
4 Sobic.006G187100 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
5 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
6 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
7 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
8 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
9 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.003G110400 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed -
11 Sobic.010G131900 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
12 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
13 Sobic.007G190000 expressed protein -
14 Sobic.004G252900 transcription factor IIA large subunit, putative, expressed K03122: TFIIA1, GTF2A1, transcription initiation factor TFIIA large subunit
15 Sobic.010G049100 acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
16 Sobic.002G131500 ABC transporter, ATP-binding protein, putative, expressed -
17 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
18 Sobic.006G160300 DNA binding protein, putative, expressed -
19 Sobic.006G201800 scramblase, putative, expressed -
20 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G511900 Sobic001G511900 Sobic004G121300 Sobic004G121300 Sobic001G511900--Sobic004G121300 Sobic008G089900 Sobic008G089900 Sobic001G511900--Sobic008G089900 Sobic003G373500 Sobic003G373500 Sobic001G511900--Sobic003G373500 Sobic006G187100 Sobic006G187100 Sobic001G511900--Sobic006G187100 Sobic003G264100 Sobic003G264100 Sobic001G511900--Sobic003G264100 Sobic004G177300 Sobic004G177300 Sobic001G511900--Sobic004G177300 Sobic006G261300 Sobic006G261300 Sobic001G511900--Sobic006G261300 Sobic001G414500 Sobic001G414500 Sobic001G511900--Sobic001G414500 Sobic002G311100 Sobic002G311100 Sobic001G511900--Sobic002G311100 Sobic001G014800 Sobic001G014800 Sobic004G121300--Sobic001G014800 Sobic010G049100 Sobic010G049100 Sobic004G121300--Sobic010G049100 Sobic001G333100 Sobic001G333100 Sobic004G121300--Sobic001G333100 Sobic001G434200 Sobic001G434200 Sobic004G121300--Sobic001G434200 Sobic008G033500 Sobic008G033500 Sobic004G121300--Sobic008G033500 Sobic002G131500 Sobic002G131500 Sobic004G121300--Sobic002G131500 Sobic006G274800 Sobic006G274800 Sobic004G121300--Sobic006G274800 Sobic005G111900 Sobic005G111900 Sobic004G121300--Sobic005G111900 Sobic010G131900 Sobic010G131900 Sobic004G121300--Sobic010G131900 Sobic006G083800 Sobic006G083800 Sobic008G089900--Sobic006G083800 Sobic009G162600 Sobic009G162600 Sobic008G089900--Sobic009G162600 Sobic004G103000 Sobic004G103000 Sobic008G089900--Sobic004G103000 Sobic002G204200 Sobic002G204200 Sobic008G089900--Sobic002G204200 Sobic002G001000 Sobic002G001000 Sobic008G089900--Sobic002G001000 Sobic008G089900--Sobic001G414500 Sobic001G243200 Sobic001G243200 Sobic008G089900--Sobic001G243200 Sobic009G187400 Sobic009G187400 Sobic008G089900--Sobic009G187400 Sobic009G207300 Sobic009G207300 Sobic008G089900--Sobic009G207300 Sobic003G373500--Sobic003G264100 Sobic003G107500 Sobic003G107500 Sobic003G373500--Sobic003G107500 Sobic002G335000 Sobic002G335000 Sobic003G373500--Sobic002G335000 Sobic003G373500--Sobic001G333100 Sobic004G252900 Sobic004G252900 Sobic003G373500--Sobic004G252900 Sobic003G311900 Sobic003G311900 Sobic003G373500--Sobic003G311900 Sobic010G239900 Sobic010G239900 Sobic003G373500--Sobic010G239900 Sobic003G373500--Sobic002G311100 Sobic010G226000 Sobic010G226000 Sobic003G373500--Sobic010G226000 Sobic002G117400 Sobic002G117400 Sobic006G187100--Sobic002G117400 Sobic002G303600 Sobic002G303600 Sobic006G187100--Sobic002G303600 Sobic004G323700 Sobic004G323700 Sobic006G187100--Sobic004G323700 Sobic010G261600 Sobic010G261600 Sobic006G187100--Sobic010G261600 Sobic006G187100--Sobic001G014800 Sobic006G196300 Sobic006G196300 Sobic006G187100--Sobic006G196300 Sobic002G008800 Sobic002G008800 Sobic006G187100--Sobic002G008800 Sobic006G187100--Sobic003G264100 Sobic001G313500 Sobic001G313500 Sobic006G187100--Sobic001G313500 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic003G264100--Sobic006G196300 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic004G177300--Sobic002G008800 Sobic003G089000 Sobic003G089000 Sobic004G177300--Sobic003G089000 Sobic002G262900 Sobic002G262900 Sobic004G177300--Sobic002G262900 Sobic004G065000 Sobic004G065000 Sobic004G177300--Sobic004G065000 Sobic010G020300 Sobic010G020300 Sobic004G177300--Sobic010G020300 Sobic004G177300--Sobic010G261600 Sobic005G059600 Sobic005G059600 Sobic004G177300--Sobic005G059600 Sobic009G133500 Sobic009G133500 Sobic004G177300--Sobic009G133500 Sobic002G263600 Sobic002G263600 Sobic004G177300--Sobic002G263600 Sobic006G261300--Sobic001G414500 Sobic009G219900 Sobic009G219900 Sobic006G261300--Sobic009G219900 Sobic001G220400 Sobic001G220400 Sobic006G261300--Sobic001G220400 Sobic006G261300--Sobic008G089900 Sobic001G143000 Sobic001G143000 Sobic006G261300--Sobic001G143000 Sobic006G261300--Sobic006G083800 Sobic003G416400 Sobic003G416400 Sobic006G261300--Sobic003G416400 Sobic006G261300--Sobic001G511900 Sobic006G261300--Sobic009G187400 Sobic001G414500--Sobic008G089900 Sobic001G414500--Sobic009G219900 Sobic001G414500--Sobic006G261300 Sobic006G092400 Sobic006G092400 Sobic001G414500--Sobic006G092400 Sobic002G217400 Sobic002G217400 Sobic001G414500--Sobic002G217400 Sobic003G077900 Sobic003G077900 Sobic001G414500--Sobic003G077900 Sobic002G290400 Sobic002G290400 Sobic001G414500--Sobic002G290400 Sobic006G090000 Sobic006G090000 Sobic001G414500--Sobic006G090000 Sobic001G503300 Sobic001G503300 Sobic001G414500--Sobic001G503300 Sobic010G147100 Sobic010G147100 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic002G311100--Sobic003G264100 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic002G311100--Sobic003G195000
Octagon: transcription factors


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