Gene annotation
| Transcriptome id | Sobic.002G039100.1 |
|---|---|
| Synonym | Sb02g003370 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) glutaredoxin, putative, expressed |
| UniProt | C5X9N3 , Q8SAB0 |
| Pfam | PF00462 |
| Panther DB | PTHR10168 PTHR10168:SF76 |
| NCBI CDD | KOG1752; Glutaredoxin and related proteins |
| KEGG Orthology | K17479; glutaredoxin domain-containing cysteine-rich protein 1 |
| Gene Ontology | GO:0015035; protein disulfide oxidoreductase activity GO:0009055electron transfer activity |
Orthologs (automatic annotation)
| TAIR | AT5G01420 : Glutaredoxin family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g06600.1 : glutaredoxin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a022796 , Zm00025a045052 , Zm00025a016150 |
| Brachypodium | KQK03477 |
| Barley | HORVU2Hr1G059940.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G039100 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G215800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.001G505000 | cyclin-dependent kinases regulatory subunit 1, putative, expressed | K02219: cyclin-dependent kinase regulatory subunit CKS1 |
| 3 | Sobic.006G013900 | RNA polymerase subunit, putative, expressed | K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11 |
| 4 | Sobic.009G165500 | Lung seven transmembrane receptor domain containing protein, putative, expressed | - |
| 5 | Sobic.010G222100 | MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 6 | Sobic.003G279100 | mitochondrial ATP synthase g subunit family protein, putative, expressed | K02140: ATPeFG, ATP5L, F-type H+-transporting ATPase subunit g |
| 7 | Sobic.006G149200 | LSM domain containing protein, expressed | K11096: SNRPD2, small nuclear ribonucleoprotein D2 |
| 8 | Sobic.003G383100 | STE_MEK_ste7_MAP2K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 9 | Sobic.001G399300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphotase protein, putative, expressed | - |
| 10 | Sobic.001G429000 | harpin-induced protein 1 domain containing protein, expressed | - |
| 11 | Sobic.001G439100 | thaumatin-like protein 1 precursor, putative, expressed | - |
| 12 | Sobic.002G162300 | expressed protein | K11270: chromosome transmission fidelity protein 8 |
| 13 | Sobic.006G231700 | LSM domain containing protein, expressed | K12626: U6 snRNA-associated Sm-like protein LSm7 |
| 14 | Sobic.001G440900 | LSM domain containing protein, expressed | K11088: SNRPD3, small nuclear ribonucleoprotein D3 |
| 15 | Sobic.002G051200 | PHF5-like protein domain containing protein, expressed | K12834: PHD finger-like domain-containing protein 5A |
| 16 | Sobic.006G274400 | harpin-induced protein 1 domain containing protein, expressed | - |
| 17 | Sobic.003G232400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 18 | Sobic.010G163732 | - | - |
| 19 | Sobic.009G188300 | universal stress protein domain containing protein, putative, expressed | - |
| 20 | Sobic.010G054200 | peptidase, T1 family, putative, expressed | K02728: 20S proteasome subunit alpha 3 |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
