Gene annotation
Transcriptome id Sobic.002G132801.1
Synonym -
Functional annotation -
UniProt A0A1W0W3Q1
Pfam PF00072
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT3G48100 : response regulator 5
RAP-DB (Rice) LOC_Os11g04720.1 : OsRR10 type-A response regulator, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G071800 - -
2 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
3 Sobic.002G064000 expressed protein -
4 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
5 Sobic.004G125200 - -
6 Sobic.004G132600 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
7 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
8 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
9 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
10 Sobic.005G183400 resistance protein, putative, expressed -
11 Sobic.010G109500 expressed protein -
12 Sobic.002G033800 expressed protein -
13 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
14 Sobic.002G328800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.13 - DUF26 kinases have homology to DUF26 containing loci, expressed -
15 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
16 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
17 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
18 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
19 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
20 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G132801 Sobic002G132801 Sobic004G071800 Sobic004G071800 Sobic002G132801--Sobic004G071800 Sobic001G448400 Sobic001G448400 Sobic002G132801--Sobic001G448400 Sobic002G064000 Sobic002G064000 Sobic002G132801--Sobic002G064000 Sobic004G343300 Sobic004G343300 Sobic002G132801--Sobic004G343300 Sobic004G125200 Sobic004G125200 Sobic002G132801--Sobic004G125200 Sobic004G132600 Sobic004G132600 Sobic002G132801--Sobic004G132600 Sobic010G276400 Sobic010G276400 Sobic002G132801--Sobic010G276400 Sobic003G052500 Sobic003G052500 Sobic002G132801--Sobic003G052500 Sobic001G274600 Sobic001G274600 Sobic002G132801--Sobic001G274600 Sobic004G071800--Sobic001G274600 Sobic003G209800 Sobic003G209800 Sobic004G071800--Sobic003G209800 Sobic004G272600 Sobic004G272600 Sobic004G071800--Sobic004G272600 Sobic004G071800--Sobic003G052500 Sobic008G038300 Sobic008G038300 Sobic004G071800--Sobic008G038300 Sobic006G073500 Sobic006G073500 Sobic004G071800--Sobic006G073500 Sobic004G071800--Sobic002G064000 Sobic002G033900 Sobic002G033900 Sobic004G071800--Sobic002G033900 Sobic001G070500 Sobic001G070500 Sobic004G071800--Sobic001G070500 Sobic006G234100 Sobic006G234100 Sobic001G448400--Sobic006G234100 Sobic002G339200 Sobic002G339200 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic010G109500 Sobic010G109500 Sobic001G448400--Sobic010G109500 Sobic006G264201 Sobic006G264201 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic001G448400--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic001G448400--Sobic001G078000 Sobic002G064000--Sobic004G071800 Sobic002G064000--Sobic004G272600 Sobic002G064000--Sobic001G274600 Sobic002G064000--Sobic003G052500 Sobic002G064000--Sobic001G070500 Sobic006G147300 Sobic006G147300 Sobic002G064000--Sobic006G147300 Sobic004G026700 Sobic004G026700 Sobic002G064000--Sobic004G026700 Sobic001G463200 Sobic001G463200 Sobic002G064000--Sobic001G463200 Sobic002G064000--Sobic006G073500 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic004G214900 Sobic004G214900 Sobic004G125200--Sobic004G214900 Sobic004G125200--Sobic004G071800 Sobic004G125200--Sobic004G132600 Sobic004G125200--Sobic002G064000 Sobic004G125200--Sobic006G147300 Sobic005G183400 Sobic005G183400 Sobic004G125200--Sobic005G183400 Sobic004G125200--Sobic004G026700 Sobic004G125200--Sobic004G272600 Sobic003G097800 Sobic003G097800 Sobic004G125200--Sobic003G097800 Sobic004G132600--Sobic004G125200 Sobic004G132600--Sobic005G183400 Sobic009G029001 Sobic009G029001 Sobic004G132600--Sobic009G029001 Sobic004G132600--Sobic002G064000 Sobic004G132600--Sobic004G071800 Sobic004G118900 Sobic004G118900 Sobic004G132600--Sobic004G118900 Sobic004G132600--Sobic006G147300 Sobic004G132600--Sobic004G343300 Sobic004G132600--Sobic004G214900 Sobic010G276400--Sobic010G109500 Sobic003G199800 Sobic003G199800 Sobic010G276400--Sobic003G199800 Sobic002G000500 Sobic002G000500 Sobic010G276400--Sobic002G000500 Sobic002G040100 Sobic002G040100 Sobic010G276400--Sobic002G040100 Sobic010G276400--Sobic006G234100 Sobic001G068400 Sobic001G068400 Sobic010G276400--Sobic001G068400 Sobic010G276400--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic010G276400--Sobic007G171600 Sobic010G276400--Sobic003G209800 Sobic003G052500--Sobic010G241000 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic001G274600--Sobic008G038300 Sobic001G274600--Sobic004G071800 Sobic001G274600--Sobic003G209800 Sobic006G011100 Sobic006G011100 Sobic001G274600--Sobic006G011100 Sobic001G274600--Sobic003G052500 Sobic010G183032 Sobic010G183032 Sobic001G274600--Sobic010G183032 Sobic001G274600--Sobic002G000500 Sobic010G108401 Sobic010G108401 Sobic001G274600--Sobic010G108401 Sobic001G274600--Sobic006G073500
Octagon: transcription factors


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