Gene annotation
Transcriptome id Sobic.002G328800.8,Sobic.002G328800.10,Sobic.002G328800.12,Sobic.002G328800.11,Sobic.002G328800.7,Sobic.002G328800.9
Synonym CRK6, Sb02g035530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
TKL_IRAK_DUF26-lc.13 - DUF26 kinases have homology to DUF26 containing loci, expressed
UniProt A0A1B6QER9 , A0A1B6QET5 , A0A1B6QET2 , A0A1B6QET6 , A0A1B6QES3 , A0A1B6QER5
Pfam PF01657 PF07714
Panther DB PTHR27002 PTHR27002:SF127
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G23160 : cysteine-rich RLK (RECEPTOR-like protein kinase) 10,cysteine-rich RLK (RECEPTOR-like protein kinase) 8
RAP-DB (Rice) LOC_Os07g35330.1 : TKL_IRAK_DUF26-lc.13 - DUF26 kinases have homology to DUF26 containing loci, expressed
MaizeGDB (Corn) Zm00025a023649
Brachypodium KQK15894 , KQK15893 , PNT74979
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
2 Sobic.010G109500 expressed protein -
3 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
4 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
5 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
6 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
7 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
8 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
9 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
10 Sobic.006G105900 Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating)
11 Sobic.001G274600 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
12 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
14 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
15 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
16 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
17 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
18 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
19 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
20 Sobic.004G035500 -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed K03319: divalent anion:Na+ symporter, DASS family


Gene co-expression network
sample Sobic002G328800 Sobic002G328800 Sobic010G276400 Sobic010G276400 Sobic002G328800--Sobic010G276400 Sobic010G109500 Sobic010G109500 Sobic002G328800--Sobic010G109500 Sobic006G234100 Sobic006G234100 Sobic002G328800--Sobic006G234100 Sobic001G448400 Sobic001G448400 Sobic002G328800--Sobic001G448400 Sobic004G343300 Sobic004G343300 Sobic002G328800--Sobic004G343300 Sobic003G052500 Sobic003G052500 Sobic002G328800--Sobic003G052500 Sobic010G241000 Sobic010G241000 Sobic002G328800--Sobic010G241000 Sobic002G339200 Sobic002G339200 Sobic002G328800--Sobic002G339200 Sobic003G209800 Sobic003G209800 Sobic002G328800--Sobic003G209800 Sobic010G276400--Sobic010G109500 Sobic003G199800 Sobic003G199800 Sobic010G276400--Sobic003G199800 Sobic002G000500 Sobic002G000500 Sobic010G276400--Sobic002G000500 Sobic002G040100 Sobic002G040100 Sobic010G276400--Sobic002G040100 Sobic010G276400--Sobic006G234100 Sobic001G068400 Sobic001G068400 Sobic010G276400--Sobic001G068400 Sobic008G038300 Sobic008G038300 Sobic010G276400--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic010G276400--Sobic007G171600 Sobic010G276400--Sobic003G209800 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic006G011100 Sobic006G011100 Sobic010G109500--Sobic006G011100 Sobic010G109500--Sobic003G209800 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic010G109500--Sobic003G052500 Sobic010G109500--Sobic004G343300 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic002G329600 Sobic002G329600 Sobic006G234100--Sobic002G329600 Sobic001G078000 Sobic001G078000 Sobic006G234100--Sobic001G078000 Sobic006G264201 Sobic006G264201 Sobic006G234100--Sobic006G264201 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic001G448400--Sobic006G264201 Sobic007G029300 Sobic007G029300 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G448400--Sobic001G078000 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic004G343300--Sobic001G448400 Sobic007G071500 Sobic007G071500 Sobic004G343300--Sobic007G071500 Sobic004G343300--Sobic010G241000 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic003G052500--Sobic010G241000 Sobic006G073500 Sobic006G073500 Sobic003G052500--Sobic006G073500 Sobic004G056900 Sobic004G056900 Sobic003G052500--Sobic004G056900 Sobic002G033900 Sobic002G033900 Sobic003G052500--Sobic002G033900 Sobic003G052500--Sobic006G105900 Sobic001G070500 Sobic001G070500 Sobic003G052500--Sobic001G070500 Sobic003G052500--Sobic003G209800 Sobic004G235200 Sobic004G235200 Sobic003G052500--Sobic004G235200 Sobic001G338700 Sobic001G338700 Sobic003G052500--Sobic001G338700 Sobic009G234600 Sobic009G234600 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic002G339200--Sobic006G234100 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic003G209800--Sobic003G052500 Sobic003G209800--Sobic010G109500 Sobic001G274600 Sobic001G274600 Sobic003G209800--Sobic001G274600 Sobic003G209800--Sobic006G011100 Sobic003G209800--Sobic008G038300 Sobic003G209800--Sobic006G234100 Sobic003G209800--Sobic006G105900 Sobic004G071800 Sobic004G071800 Sobic003G209800--Sobic004G071800 Sobic003G209800--Sobic002G000500
Octagon: transcription factors


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