Gene annotation
Transcriptome id Sobic.002G198500.1
Synonym Sb02g024460
Functional annotation basic helix-loop-helix family protein, putative, expressed
UniProt C5XC82
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF98
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68810 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os09g24490.1 : basic helix-loop-helix family protein, putative, expressed
MaizeGDB (Corn) Zm00025a031136 , Zm00025a013894
Brachypodium KQJ90194 , KQK22480
Barley HORVU5Hr1G066530.3 , HORVU5Hr1G066530.2 , HORVU5Hr1G066530.6 , HORVU5Hr1G066530.5 , HORVU5Hr1G066530.4
Wheat TraesCS5A02G198900 , TraesCS5A02G230500 , TraesCS5D02G237300 , TraesCS5B02G229000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G289100 cyclase/dehydrase family protein, putative, expressed K14496: abscisic acid receptor PYR/PYL family
2 Sobic.002G320800 expressed protein -
3 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
4 Sobic.007G157900 gibberellin receptor GID1L2, putative, expressed -
5 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
6 Sobic.004G351500 - -
7 Sobic.009G002400 polygalacturonase inhibitor precursor, putative, expressed -
8 Sobic.003G219800 transferase family protein, putative, expressed -
9 Sobic.003G039600 expressed protein -
10 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
11 Sobic.003G294400 VQ domain containing protein, putative, expressed -
12 Sobic.004G062500 "4-coumaroyl-CoA synthetase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Brown midrib2 (Bmr2) encodes the major 4-coumarate:coenzyme A ligase involved in lignin biosynthesis(PubMedID : 22313236)@4-Coumarate: Coenzyme A Ligase (4CL)(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
13 Sobic.004G308400 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
14 Sobic.003G135700 - -
15 Sobic.010G148400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsMADS75 - MADS-box family gene with M-alpha type-box, expressed -
16 Sobic.001G428200 expressed protein -
17 Sobic.008G055100 dirigent, putative, expressed -
18 Sobic.008G127500 expressed protein -
19 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
20 Sobic.010G239500 ubiquitin family protein, putative, expressed K08770: ubiquitin C


Gene co-expression network
sample Sobic002G198500 Sobic002G198500 Sobic001G289100 Sobic001G289100 Sobic002G198500--Sobic001G289100 Sobic002G320800 Sobic002G320800 Sobic002G198500--Sobic002G320800 Sobic003G410500 Sobic003G410500 Sobic002G198500--Sobic003G410500 Sobic007G157900 Sobic007G157900 Sobic002G198500--Sobic007G157900 Sobic010G268400 Sobic010G268400 Sobic002G198500--Sobic010G268400 Sobic004G351500 Sobic004G351500 Sobic002G198500--Sobic004G351500 Sobic009G002400 Sobic009G002400 Sobic002G198500--Sobic009G002400 Sobic003G219800 Sobic003G219800 Sobic002G198500--Sobic003G219800 Sobic003G039600 Sobic003G039600 Sobic002G198500--Sobic003G039600 Sobic001G289100--Sobic002G320800 Sobic002G115000 Sobic002G115000 Sobic001G289100--Sobic002G115000 Sobic001G086900 Sobic001G086900 Sobic001G289100--Sobic001G086900 Sobic003G249700 Sobic003G249700 Sobic001G289100--Sobic003G249700 Sobic003G109600 Sobic003G109600 Sobic001G289100--Sobic003G109600 Sobic001G483100 Sobic001G483100 Sobic001G289100--Sobic001G483100 Sobic001G444800 Sobic001G444800 Sobic001G289100--Sobic001G444800 Sobic001G058900 Sobic001G058900 Sobic001G289100--Sobic001G058900 Sobic001G039400 Sobic001G039400 Sobic001G289100--Sobic001G039400 Sobic002G320800--Sobic003G219800 Sobic001G016500 Sobic001G016500 Sobic002G320800--Sobic001G016500 Sobic006G156000 Sobic006G156000 Sobic002G320800--Sobic006G156000 Sobic003G429000 Sobic003G429000 Sobic002G320800--Sobic003G429000 Sobic002G320800--Sobic003G109600 Sobic002G047600 Sobic002G047600 Sobic002G320800--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic002G320800--Sobic006G216600 Sobic003G436700 Sobic003G436700 Sobic002G320800--Sobic003G436700 Sobic004G062500 Sobic004G062500 Sobic002G320800--Sobic004G062500 Sobic001G040100 Sobic001G040100 Sobic003G410500--Sobic001G040100 Sobic003G410500--Sobic001G444800 Sobic004G138800 Sobic004G138800 Sobic003G410500--Sobic004G138800 Sobic003G410500--Sobic003G219800 Sobic002G257300 Sobic002G257300 Sobic003G410500--Sobic002G257300 Sobic001G304400 Sobic001G304400 Sobic003G410500--Sobic001G304400 Sobic003G363800 Sobic003G363800 Sobic003G410500--Sobic003G363800 Sobic009G212400 Sobic009G212400 Sobic003G410500--Sobic009G212400 Sobic009G238900 Sobic009G238900 Sobic003G410500--Sobic009G238900 Sobic007G157900--Sobic009G238900 Sobic007G157900--Sobic004G351500 Sobic010G194100 Sobic010G194100 Sobic007G157900--Sobic010G194100 Sobic002G232700 Sobic002G232700 Sobic007G157900--Sobic002G232700 Sobic009G054100 Sobic009G054100 Sobic007G157900--Sobic009G054100 Sobic003G417100 Sobic003G417100 Sobic007G157900--Sobic003G417100 Sobic007G157900--Sobic004G062500 Sobic004G262500 Sobic004G262500 Sobic007G157900--Sobic004G262500 Sobic007G127100 Sobic007G127100 Sobic007G157900--Sobic007G127100 Sobic002G329000 Sobic002G329000 Sobic010G268400--Sobic002G329000 Sobic001G516600 Sobic001G516600 Sobic010G268400--Sobic001G516600 Sobic003G192100 Sobic003G192100 Sobic010G268400--Sobic003G192100 Sobic005G093000 Sobic005G093000 Sobic010G268400--Sobic005G093000 Sobic001G107400 Sobic001G107400 Sobic010G268400--Sobic001G107400 Sobic003G037800 Sobic003G037800 Sobic010G268400--Sobic003G037800 Sobic002G245100 Sobic002G245100 Sobic010G268400--Sobic002G245100 Sobic010G268400--Sobic003G429000 Sobic010G195500 Sobic010G195500 Sobic010G268400--Sobic010G195500 Sobic001G364500 Sobic001G364500 Sobic004G351500--Sobic001G364500 Sobic001G087900 Sobic001G087900 Sobic004G351500--Sobic001G087900 Sobic002G155500 Sobic002G155500 Sobic004G351500--Sobic002G155500 Sobic001G034700 Sobic001G034700 Sobic004G351500--Sobic001G034700 Sobic009G062000 Sobic009G062000 Sobic004G351500--Sobic009G062000 Sobic004G225500 Sobic004G225500 Sobic004G351500--Sobic004G225500 Sobic001G536500 Sobic001G536500 Sobic004G351500--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic004G351500--Sobic002G078400 Sobic008G129400 Sobic008G129400 Sobic004G351500--Sobic008G129400 Sobic009G002400--Sobic003G039600 Sobic006G274933 Sobic006G274933 Sobic009G002400--Sobic006G274933 Sobic010G071400 Sobic010G071400 Sobic009G002400--Sobic010G071400 Sobic001G238800 Sobic001G238800 Sobic009G002400--Sobic001G238800 Sobic003G119500 Sobic003G119500 Sobic009G002400--Sobic003G119500 Sobic004G159733 Sobic004G159733 Sobic009G002400--Sobic004G159733 Sobic003G411200 Sobic003G411200 Sobic009G002400--Sobic003G411200 Sobic003G311800 Sobic003G311800 Sobic009G002400--Sobic003G311800 Sobic001G532200 Sobic001G532200 Sobic009G002400--Sobic001G532200 Sobic001G418100 Sobic001G418100 Sobic003G219800--Sobic001G418100 Sobic009G181800 Sobic009G181800 Sobic003G219800--Sobic009G181800 Sobic003G219800--Sobic001G444800 Sobic003G219800--Sobic006G156000 Sobic003G443300 Sobic003G443300 Sobic003G219800--Sobic003G443300 Sobic003G219800--Sobic001G040100 Sobic005G112800 Sobic005G112800 Sobic003G219800--Sobic005G112800 Sobic005G113300 Sobic005G113300 Sobic003G219800--Sobic005G113300 Sobic003G219800--Sobic009G238900 Sobic003G039600--Sobic009G002400 Sobic003G039600--Sobic006G274933 Sobic007G149800 Sobic007G149800 Sobic003G039600--Sobic007G149800 Sobic003G039600--Sobic003G411200 Sobic003G039600--Sobic001G238800 Sobic009G106400 Sobic009G106400 Sobic003G039600--Sobic009G106400 Sobic007G090460 Sobic007G090460 Sobic003G039600--Sobic007G090460 Sobic007G218800 Sobic007G218800 Sobic003G039600--Sobic007G218800 Sobic010G088800 Sobic010G088800 Sobic003G039600--Sobic010G088800
Octagon: transcription factors


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