Gene annotation
Transcriptome id Sobic.002G249500.5,Sobic.002G249500.2,Sobic.002G249500.4,Sobic.002G249500.7,Sobic.002G249500.6
Synonym Sb02g028540, ATU2AF35A
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
splicing factor U2AF, putative, expressed
UniProt A0A1B6QDD4
Pfam PF00642 PF13893 PF13893 PF00642
Panther DB PTHR12620:SF13 PTHR12620 PTHR12620 PTHR12620:SF13
NCBI CDD KOG2202; U2 snRNP splicing factor, small subunit, and related proteins
KEGG Orthology K12836; splicing factor U2AF 35 kDa subunit
Gene Ontology GO:0003723; RNA binding GO:0005634nucleus GO:0005634nucleus GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G42820 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os09g31482.1,LOC_Os09g31482.3 : splicing factor U2AF, putative, expressed
MaizeGDB (Corn) Zm00025a047472
Brachypodium KQJ90780 , PNT64841 , KQJ90779
Barley HORVU5Hr1G073680.3 , HORVU5Hr1G073680.2 , HORVU5Hr1G073680.1 , HORVU5Hr1G073680.5 , HORVU5Hr1G073680.4 , HORVU5Hr1G073660.1 , HORVU5Hr1G073660.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G249500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G099700 peptide transporter PTR2, putative, expressed -
2 Sobic.001G498000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.005G104400 - -
4 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
5 Sobic.002G187700 expressed protein -
6 Sobic.007G126400 CPuORF27 - conserved peptide uORF-containing transcript, expressed K09338: homeobox-leucine zipper protein
7 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
8 Sobic.004G219400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
9 Sobic.008G024500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CRP11 - Cysteine-rich family protein precursor, expressed -
10 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
11 Sobic.003G024200 glutathione gamma-glutamylcysteinyltransferase 1, putative, expressed K05941: glutathione gamma-glutamylcysteinyltransferase
12 Sobic.003G115900 lissencephaly type-1-like homology motif, putative, expressed -
13 Sobic.002G130800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
14 Sobic.005G209500 expressed protein -
15 Sobic.004G233200 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
16 Sobic.003G389700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G118200 reticulon domain containing protein, putative, expressed -
18 Sobic.003G354900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulator of chromosome condensation, putative, expressed -
19 Sobic.003G263001 - -
20 Sobic.002G386100 expressed protein -


Gene co-expression network
sample Sobic002G249500 Sobic002G249500 Sobic010G099700 Sobic010G099700 Sobic002G249500--Sobic010G099700 Sobic001G498000 Sobic001G498000 Sobic002G249500--Sobic001G498000 Sobic005G104400 Sobic005G104400 Sobic002G249500--Sobic005G104400 Sobic004G091100 Sobic004G091100 Sobic002G249500--Sobic004G091100 Sobic002G187700 Sobic002G187700 Sobic002G249500--Sobic002G187700 Sobic007G126400 Sobic007G126400 Sobic002G249500--Sobic007G126400 Sobic008G059100 Sobic008G059100 Sobic002G249500--Sobic008G059100 Sobic004G219400 Sobic004G219400 Sobic002G249500--Sobic004G219400 Sobic008G024500 Sobic008G024500 Sobic002G249500--Sobic008G024500 Sobic009G038900 Sobic009G038900 Sobic010G099700--Sobic009G038900 Sobic004G356400 Sobic004G356400 Sobic010G099700--Sobic004G356400 Sobic008G094000 Sobic008G094000 Sobic010G099700--Sobic008G094000 Sobic002G056500 Sobic002G056500 Sobic010G099700--Sobic002G056500 Sobic004G169000 Sobic004G169000 Sobic010G099700--Sobic004G169000 Sobic003G343500 Sobic003G343500 Sobic010G099700--Sobic003G343500 Sobic005G101200 Sobic005G101200 Sobic010G099700--Sobic005G101200 Sobic001G333800 Sobic001G333800 Sobic010G099700--Sobic001G333800 Sobic006G133900 Sobic006G133900 Sobic010G099700--Sobic006G133900 Sobic001G498000--Sobic004G219400 Sobic006G130300 Sobic006G130300 Sobic001G498000--Sobic006G130300 Sobic003G391200 Sobic003G391200 Sobic001G498000--Sobic003G391200 Sobic008G115900 Sobic008G115900 Sobic001G498000--Sobic008G115900 Sobic002G382700 Sobic002G382700 Sobic001G498000--Sobic002G382700 Sobic001G017300 Sobic001G017300 Sobic001G498000--Sobic001G017300 Sobic006G158100 Sobic006G158100 Sobic001G498000--Sobic006G158100 Sobic006G221000 Sobic006G221000 Sobic001G498000--Sobic006G221000 Sobic004G082300 Sobic004G082300 Sobic001G498000--Sobic004G082300 Sobic001G262700 Sobic001G262700 Sobic005G104400--Sobic001G262700 Sobic010G025300 Sobic010G025300 Sobic005G104400--Sobic010G025300 Sobic010G223700 Sobic010G223700 Sobic005G104400--Sobic010G223700 Sobic002G400200 Sobic002G400200 Sobic005G104400--Sobic002G400200 Sobic010G089100 Sobic010G089100 Sobic005G104400--Sobic010G089100 Sobic009G167600 Sobic009G167600 Sobic005G104400--Sobic009G167600 Sobic005G104400--Sobic004G091100 Sobic007G020600 Sobic007G020600 Sobic005G104400--Sobic007G020600 Sobic002G427050 Sobic002G427050 Sobic005G104400--Sobic002G427050 Sobic009G165700 Sobic009G165700 Sobic004G091100--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic004G091100--Sobic001G451400 Sobic010G118950 Sobic010G118950 Sobic004G091100--Sobic010G118950 Sobic009G191000 Sobic009G191000 Sobic004G091100--Sobic009G191000 Sobic008G087866 Sobic008G087866 Sobic004G091100--Sobic008G087866 Sobic001G128300 Sobic001G128300 Sobic004G091100--Sobic001G128300 Sobic001G534700 Sobic001G534700 Sobic004G091100--Sobic001G534700 Sobic003G422500 Sobic003G422500 Sobic004G091100--Sobic003G422500 Sobic001G050200 Sobic001G050200 Sobic004G091100--Sobic001G050200 Sobic001G481900 Sobic001G481900 Sobic002G187700--Sobic001G481900 Sobic004G306500 Sobic004G306500 Sobic002G187700--Sobic004G306500 Sobic002G187700--Sobic008G059100 Sobic003G198800 Sobic003G198800 Sobic002G187700--Sobic003G198800 Sobic001G488700 Sobic001G488700 Sobic002G187700--Sobic001G488700 Sobic003G115900 Sobic003G115900 Sobic002G187700--Sobic003G115900 Sobic006G002300 Sobic006G002300 Sobic002G187700--Sobic006G002300 Sobic003G190400 Sobic003G190400 Sobic002G187700--Sobic003G190400 Sobic002G187700--Sobic004G169000 Sobic005G188600 Sobic005G188600 Sobic007G126400--Sobic005G188600 Sobic001G484400 Sobic001G484400 Sobic007G126400--Sobic001G484400 Sobic003G003600 Sobic003G003600 Sobic007G126400--Sobic003G003600 Sobic007G126400--Sobic008G094000 Sobic001G073900 Sobic001G073900 Sobic007G126400--Sobic001G073900 Sobic007G126400--Sobic010G099700 Sobic005G110502 Sobic005G110502 Sobic007G126400--Sobic005G110502 Sobic007G126400--Sobic008G115900 Sobic001G065600 Sobic001G065600 Sobic007G126400--Sobic001G065600 Sobic008G059100--Sobic001G488700 Sobic008G059100--Sobic002G187700 Sobic001G409300 Sobic001G409300 Sobic008G059100--Sobic001G409300 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic007G164000 Sobic007G164000 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic004G219400--Sobic001G498000 Sobic002G381700 Sobic002G381700 Sobic004G219400--Sobic002G381700 Sobic004G219400--Sobic003G391200 Sobic004G219400--Sobic001G017300 Sobic009G015100 Sobic009G015100 Sobic004G219400--Sobic009G015100 Sobic004G219400--Sobic006G130300 Sobic004G355700 Sobic004G355700 Sobic004G219400--Sobic004G355700 Sobic001G514800 Sobic001G514800 Sobic004G219400--Sobic001G514800 Sobic008G149000 Sobic008G149000 Sobic004G219400--Sobic008G149000 Sobic008G024500--Sobic002G249500 Sobic003G028800 Sobic003G028800 Sobic008G024500--Sobic003G028800 Sobic010G061100 Sobic010G061100 Sobic008G024500--Sobic010G061100 Sobic004G241700 Sobic004G241700 Sobic008G024500--Sobic004G241700 Sobic003G024200 Sobic003G024200 Sobic008G024500--Sobic003G024200 Sobic008G024500--Sobic009G190700 Sobic006G212600 Sobic006G212600 Sobic008G024500--Sobic006G212600 Sobic006G248700 Sobic006G248700 Sobic008G024500--Sobic006G248700 Sobic003G412600 Sobic003G412600 Sobic008G024500--Sobic003G412600
Octagon: transcription factors


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