Gene annotation
Transcriptome id Sobic.002G355000.1
Synonym WRKY20, WRKY transcription factor, AtWRKY20, Sb02g037660
Functional annotation "Belonging to the Sdw3 locus, Sbi_sdw3" (PubMedID : 20464438)
WRKY87, expressed
UniProt A0A1B6QF72
Pfam PF03106
Panther DB PTHR31221 PTHR31221:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G26640 : WRKY family transcription factor family protein
RAP-DB (Rice) LOC_Os07g39480.1 : WRKY87, expressed
MaizeGDB (Corn) Zm00025a015034 , Zm00025a039695 , Zm00025a048535 , Zm00025a055567 , Zm00025a057883 , Zm00025a057886 , Zm00025a049383 , Zm00025a024447
Brachypodium KQK15507 , KQK15508
Barley HORVU2Hr1G036320.1 , HORVU2Hr1G036320.2 , HORVU2Hr1G036320.3 , HORVU2Hr1G036320.4
Wheat TraesCS2B02G217400 , TraesCS2D02G198100 , TraesCS2D02G198100 , TraesCS2D02G198100 , TraesCS2D02G198100 , TraesCS2A02G189700 , TraesCS2A02G189700 , TraesCS2A02G189700 , TraesCS2B02G217400 , TraesCS2B02G217400
Populus PNT31448 , PNT31451 , PNT31450 , PNT31453 , PNT31455 , PNT31454 , PNT31456 , PNS98550 , PNS98551 , PNS98552 , PNS98547 , PNS98546 , PNS98545 , PNS98549 , PNS98548 , PNT08474 , PNT08473


JBrowse

Open New Page


cDNA sequences
Sobic.002G355000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
2 Sobic.007G091600 proline rich protein 3, putative, expressed -
3 Sobic.007G183300 expressed protein -
4 Sobic.006G118700 MYB family transcription factor, putative, expressed -
5 Sobic.005G015450 - -
6 Sobic.009G195200 ESP1, putative, expressed -
7 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
8 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
9 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
10 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
11 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
12 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
13 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
14 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
15 Sobic.004G156500 expressed protein -
16 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
17 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
18 Sobic.006G049100 expressed protein -
19 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
20 Sobic.001G051700 expressed protein -


Gene co-expression network
sample Sobic002G355000 Sobic002G355000 Sobic007G191700 Sobic007G191700 Sobic002G355000--Sobic007G191700 Sobic007G091600 Sobic007G091600 Sobic002G355000--Sobic007G091600 Sobic007G183300 Sobic007G183300 Sobic002G355000--Sobic007G183300 Sobic006G118700 Sobic006G118700 Sobic002G355000--Sobic006G118700 Sobic005G015450 Sobic005G015450 Sobic002G355000--Sobic005G015450 Sobic009G195200 Sobic009G195200 Sobic002G355000--Sobic009G195200 Sobic009G164000 Sobic009G164000 Sobic002G355000--Sobic009G164000 Sobic001G395100 Sobic001G395100 Sobic002G355000--Sobic001G395100 Sobic001G507400 Sobic001G507400 Sobic002G355000--Sobic001G507400 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic007G091600--Sobic006G118700 Sobic007G091600--Sobic007G191700 Sobic002G264200 Sobic002G264200 Sobic007G091600--Sobic002G264200 Sobic004G084300 Sobic004G084300 Sobic007G091600--Sobic004G084300 Sobic005G021500 Sobic005G021500 Sobic007G091600--Sobic005G021500 Sobic010G236400 Sobic010G236400 Sobic007G091600--Sobic010G236400 Sobic009G177500 Sobic009G177500 Sobic007G091600--Sobic009G177500 Sobic007G091600--Sobic004G129300 Sobic003G394300 Sobic003G394300 Sobic007G091600--Sobic003G394300 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic007G183900 Sobic007G183900 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic006G118700--Sobic007G091600 Sobic003G422900 Sobic003G422900 Sobic005G015450--Sobic003G422900 Sobic002G268400 Sobic002G268400 Sobic005G015450--Sobic002G268400 Sobic006G014100 Sobic006G014100 Sobic005G015450--Sobic006G014100 Sobic005G015450--Sobic007G191700 Sobic001G094900 Sobic001G094900 Sobic005G015450--Sobic001G094900 Sobic006G270900 Sobic006G270900 Sobic005G015450--Sobic006G270900 Sobic006G101700 Sobic006G101700 Sobic005G015450--Sobic006G101700 Sobic003G264200 Sobic003G264200 Sobic005G015450--Sobic003G264200 Sobic008G153500 Sobic008G153500 Sobic005G015450--Sobic008G153500 Sobic002G259800 Sobic002G259800 Sobic009G195200--Sobic002G259800 Sobic003G433500 Sobic003G433500 Sobic009G195200--Sobic003G433500 Sobic006G267300 Sobic006G267300 Sobic009G195200--Sobic006G267300 Sobic009G195200--Sobic002G264200 Sobic001G246500 Sobic001G246500 Sobic009G195200--Sobic001G246500 Sobic003G355000 Sobic003G355000 Sobic009G195200--Sobic003G355000 Sobic009G195200--Sobic007G091600 Sobic001G306900 Sobic001G306900 Sobic009G195200--Sobic001G306900 Sobic001G226000 Sobic001G226000 Sobic009G195200--Sobic001G226000 Sobic004G176400 Sobic004G176400 Sobic009G164000--Sobic004G176400 Sobic009G164000--Sobic003G422900 Sobic002G371700 Sobic002G371700 Sobic009G164000--Sobic002G371700 Sobic001G114500 Sobic001G114500 Sobic009G164000--Sobic001G114500 Sobic003G132000 Sobic003G132000 Sobic009G164000--Sobic003G132000 Sobic008G103300 Sobic008G103300 Sobic009G164000--Sobic008G103300 Sobic004G353000 Sobic004G353000 Sobic009G164000--Sobic004G353000 Sobic002G300700 Sobic002G300700 Sobic009G164000--Sobic002G300700 Sobic001G249700 Sobic001G249700 Sobic009G164000--Sobic001G249700 Sobic006G121300 Sobic006G121300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic001G395100--Sobic007G191700 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.