Gene annotation
Transcriptome id Sobic.002G355400.1
Synonym Spotted leaf protein 11, Sb02g037700
Functional annotation "Belonging to the Sdw3 locus, Sbi_sdw3" (PubMedID : 20464438)
spotted leaf 11, putative, expressed
UniProt C6JSA1 , C5XCH8
Pfam PF00514
Panther DB PTHR23315 PTHR23315:SF129
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G16490 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os07g39590.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a015036 , Zm00025a048541
Brachypodium KQK15496
Barley HORVU6Hr1G030820.4 , HORVU7Hr1G038870.2 , HORVU7Hr1G038870.1 , HORVU2Hr1G036080.15 , HORVU2Hr1G036080.14 , HORVU2Hr1G036080.16 , HORVU2Hr1G036080.13 , HORVU2Hr1G036080.12 , HORVU2Hr1G100140.2 , HORVU2Hr1G100140.3 , HORVU2Hr1G100140.1 , HORVU6Hr1G030820.1 , HORVU6Hr1G030820.3 , HORVU6Hr1G030820.2
Wheat TraesCS2D02G197200 , TraesCS2B02G216300 , TraesCS2A02G190800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G355400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G106900 OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed -
2 Sobic.002G362300 prefoldin, putative, expressed -
3 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
5 Sobic.004G077000 expressed protein -
6 Sobic.001G252500 expressed protein -
7 Sobic.009G126800 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
8 Sobic.006G278200 RNA-binding region RNP-1, putative, expressed -
9 Sobic.005G072400 expressed protein -
10 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
11 Sobic.009G216000 mov34 family protein, putative, expressed K11864: BRCC3, BRCA1/BRCA2-containing complex subunit 3
12 Sobic.002G014700 OsFBX209 - F-box domain containing protein, expressed -
13 Sobic.005G030300 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.002G018600 OsFBX234 - F-box domain containing protein, expressed -
15 Sobic.006G120800 transglutaminase, putative, expressed -
16 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
17 Sobic.006G248500 expressed protein -
18 Sobic.001G294100 ICE-like protease p20 domain containing protein, expressed -
19 Sobic.004G260400 expressed protein K07018: uncharacterized protein
20 Sobic.001G428000 uncharacterized TPR repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G355400 Sobic002G355400 Sobic002G106900 Sobic002G106900 Sobic002G355400--Sobic002G106900 Sobic002G362300 Sobic002G362300 Sobic002G355400--Sobic002G362300 Sobic002G253600 Sobic002G253600 Sobic002G355400--Sobic002G253600 Sobic007G117100 Sobic007G117100 Sobic002G355400--Sobic007G117100 Sobic004G077000 Sobic004G077000 Sobic002G355400--Sobic004G077000 Sobic001G252500 Sobic001G252500 Sobic002G355400--Sobic001G252500 Sobic009G126800 Sobic009G126800 Sobic002G355400--Sobic009G126800 Sobic006G278200 Sobic006G278200 Sobic002G355400--Sobic006G278200 Sobic005G072400 Sobic005G072400 Sobic002G355400--Sobic005G072400 Sobic002G106900--Sobic001G252500 Sobic008G165100 Sobic008G165100 Sobic002G106900--Sobic008G165100 Sobic002G018600 Sobic002G018600 Sobic002G106900--Sobic002G018600 Sobic003G442000 Sobic003G442000 Sobic002G106900--Sobic003G442000 Sobic010G000700 Sobic010G000700 Sobic002G106900--Sobic010G000700 Sobic002G151600 Sobic002G151600 Sobic002G106900--Sobic002G151600 Sobic005G015900 Sobic005G015900 Sobic002G106900--Sobic005G015900 Sobic001G108900 Sobic001G108900 Sobic002G106900--Sobic001G108900 Sobic008G073000 Sobic008G073000 Sobic002G106900--Sobic008G073000 Sobic005G009200 Sobic005G009200 Sobic002G362300--Sobic005G009200 Sobic001G371000 Sobic001G371000 Sobic002G362300--Sobic001G371000 Sobic003G433500 Sobic003G433500 Sobic002G362300--Sobic003G433500 Sobic005G229000 Sobic005G229000 Sobic002G362300--Sobic005G229000 Sobic002G362300--Sobic008G073000 Sobic009G030300 Sobic009G030300 Sobic002G362300--Sobic009G030300 Sobic002G095700 Sobic002G095700 Sobic002G362300--Sobic002G095700 Sobic005G030300 Sobic005G030300 Sobic002G362300--Sobic005G030300 Sobic009G044900 Sobic009G044900 Sobic002G362300--Sobic009G044900 Sobic002G253600--Sobic005G072400 Sobic002G016900 Sobic002G016900 Sobic002G253600--Sobic002G016900 Sobic003G244700 Sobic003G244700 Sobic002G253600--Sobic003G244700 Sobic002G253600--Sobic009G126800 Sobic006G203200 Sobic006G203200 Sobic002G253600--Sobic006G203200 Sobic008G156200 Sobic008G156200 Sobic002G253600--Sobic008G156200 Sobic002G253600--Sobic006G278200 Sobic003G022200 Sobic003G022200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic001G038100 Sobic001G038100 Sobic007G117100--Sobic001G038100 Sobic007G117100--Sobic003G433500 Sobic003G132700 Sobic003G132700 Sobic007G117100--Sobic003G132700 Sobic006G120800 Sobic006G120800 Sobic007G117100--Sobic006G120800 Sobic001G507400 Sobic001G507400 Sobic007G117100--Sobic001G507400 Sobic001G309100 Sobic001G309100 Sobic007G117100--Sobic001G309100 Sobic003G354100 Sobic003G354100 Sobic007G117100--Sobic003G354100 Sobic002G014700 Sobic002G014700 Sobic007G117100--Sobic002G014700 Sobic002G089900 Sobic002G089900 Sobic007G117100--Sobic002G089900 Sobic004G077000--Sobic005G229000 Sobic001G428400 Sobic001G428400 Sobic004G077000--Sobic001G428400 Sobic004G077000--Sobic002G362300 Sobic004G077000--Sobic003G442000 Sobic008G034600 Sobic008G034600 Sobic004G077000--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic004G077000--Sobic002G157200 Sobic009G225200 Sobic009G225200 Sobic004G077000--Sobic009G225200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900 Sobic001G252500--Sobic002G151600 Sobic001G252500--Sobic003G442000 Sobic001G045700 Sobic001G045700 Sobic001G252500--Sobic001G045700 Sobic001G252500--Sobic002G106900 Sobic001G252500--Sobic005G009200 Sobic001G252500--Sobic004G077000 Sobic006G123900 Sobic006G123900 Sobic001G252500--Sobic006G123900 Sobic001G252500--Sobic008G165100 Sobic001G252500--Sobic007G224900 Sobic009G126800--Sobic002G253600 Sobic009G126800--Sobic002G362300 Sobic002G408600 Sobic002G408600 Sobic009G126800--Sobic002G408600 Sobic009G126800--Sobic008G165100 Sobic009G126800--Sobic003G433500 Sobic009G126800--Sobic005G009200 Sobic010G202600 Sobic010G202600 Sobic009G126800--Sobic010G202600 Sobic001G230500 Sobic001G230500 Sobic009G126800--Sobic001G230500 Sobic010G235800 Sobic010G235800 Sobic009G126800--Sobic010G235800 Sobic006G278200--Sobic002G095700 Sobic006G278200--Sobic008G073000 Sobic006G278200--Sobic005G072400 Sobic006G278200--Sobic005G030300 Sobic001G202266 Sobic001G202266 Sobic006G278200--Sobic001G202266 Sobic002G341100 Sobic002G341100 Sobic006G278200--Sobic002G341100 Sobic009G137900 Sobic009G137900 Sobic006G278200--Sobic009G137900 Sobic006G278200--Sobic002G089900 Sobic002G067800 Sobic002G067800 Sobic006G278200--Sobic002G067800 Sobic005G072400--Sobic006G278200 Sobic005G072400--Sobic002G253600 Sobic005G198200 Sobic005G198200 Sobic005G072400--Sobic005G198200 Sobic003G343600 Sobic003G343600 Sobic005G072400--Sobic003G343600 Sobic005G072400--Sobic009G137900 Sobic005G072400--Sobic001G230500 Sobic005G072400--Sobic003G415100 Sobic002G159200 Sobic002G159200 Sobic005G072400--Sobic002G159200 Sobic006G261100 Sobic006G261100 Sobic005G072400--Sobic006G261100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.