Gene annotation
| Transcriptome id | Sobic.002G369800.1 |
|---|---|
| Synonym | NF-YB3, SbNF-YB3, Sb02g038870, Nuclear Factor Y |
| Functional annotation | tentative name (PubMedID : 31536532) histone-like transcription factor and archaeal histone, putative, expressed |
| UniProt | C5XDX7 |
| Pfam | PF00808 |
| Panther DB | PTHR11064 PTHR11064:SF45 |
| NCBI CDD | KOG0869; CCAAT-binding factor, subunit A (HAP3) |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G14540 : nuclear factor Y, subunit B3 |
|---|---|
| RAP-DB (Rice) | LOC_Os07g41580.1 : histone-like transcription factor and archaeal histone, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048711 , Zm00025a030028 , Zm00025a039184 , Zm00025a015157 , Zm00025a002857 |
| Brachypodium | KQK15318 , KQJ95195 , KQK21295 |
| Barley | HORVU7Hr1G105500.5 , HORVU7Hr1G105500.8 , HORVU7Hr1G105500.7 , HORVU7Hr1G105500.9 , HORVU2Hr1G032320.4 , HORVU7Hr1G105500.1 , HORVU7Hr1G105500.3 , HORVU7Hr1G105500.4 , HORVU7Hr1G105500.6 , HORVU7Hr1G105460.1 , HORVU2Hr1G032320.1 , HORVU2Hr1G032320.2 , HORVU2Hr1G032320.3 , HORVU7Hr1G105500.2 , HORVU2Hr1G087460.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G131400 | thioesterase family protein, putative, expressed | - |
| 2 | Sobic.005G168700 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 3 | Sobic.003G271201 | - | - |
| 4 | Sobic.003G400200 | plant-specific domain TIGR01615 family protein, expressed | - |
| 5 | Sobic.006G168300 | "NUDIX family, domain containing protein"("PubMedID : 26759170,PubMedID : 24597475")@hydrolase, NUDIX family, domain containing protein, expressed | - |
| 6 | Sobic.009G232266 | - | - |
| 7 | Sobic.001G032000 | peptide transporter PTR2, putative, expressed | - |
| 8 | Sobic.001G093900 | stem-specific protein TSJT1, putative, expressed | - |
| 9 | Sobic.001G234800 | inorganic phosphate transporter, putative, expressed | K08176: MFS transporter, PHS family, inorganic phosphate transporter |
| 10 | Sobic.006G206700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@leucine rich repeat containing protein, expressed | - |
| 11 | Sobic.001G225600 | expressed protein | - |
| 12 | Sobic.010G135000 | thioredoxin reductase 2, putative, expressed | K00384: trxB, thioredoxin reductase (NADPH) |
| 13 | Sobic.003G341600 | prenylated rab acceptor, putative, expressed | - |
| 14 | Sobic.003G082600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML16 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 15 | Sobic.004G293100 | phosphatase, putative, expressed | - |
| 16 | Sobic.006G206000 | WRKY68, expressed | - |
| 17 | Sobic.002G319100 | hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 18 | Sobic.009G131100 | transmembrane BAX inhibitor motif-containing protein, putative, expressed | K06890: uncharacterized protein |
| 19 | Sobic.001G024500 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 20 | Sobic.003G395400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@BTBZ2 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed | - |
Gene co-expression network
Octagon: transcription factors
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