Gene annotation
Transcriptome id Sobic.002G384700.2
Synonym Sb02g040080
Functional annotation 40S ribosomal protein S9-2, putative, expressed
UniProt A0A1W0W7E0 , A0A109NDF0 , A1E9S6
Pfam PF00163 PF01479
Panther DB PTHR11831 PTHR11831:SF11
NCBI CDD KOG3301; Ribosomal protein S4
KEGG Orthology K02997; RP-S9e, small subunit ribosomal protein S9e
Gene Ontology GO:0005622; intracellular GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT5G39850 : Ribosomal protein S4
RAP-DB (Rice) LOC_Os03g05980.1 : 40S ribosomal protein S9-2, putative, expressed
MaizeGDB (Corn) Zm00025a052075 , Zm00025a002671 , Zm00025a015259 , Zm00025a048842
Brachypodium KQK15092 , KQJ86681
Barley HORVU2Hr1G028510.4 , HORVU2Hr1G028510.2 , HORVU2Hr1G028510.3 , HORVU2Hr1G028510.1
Wheat TraesCS2B02G183500 , TraesCS2D02G164100
Populus PNS98431 , PNS98430 , PNS98434


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cDNA sequences
Sobic.002G384700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G172600 ATCHX, putative, expressed -
2 Sobic.004G045400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
3 Sobic.008G027600 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G114900 - -
5 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
6 Sobic.010G211600 Up-reguralion under heat(PubMedID : 24916767)@gp176, putative, expressed -
7 Sobic.003G060000 Cupin domain containing protein, expressed -
8 Sobic.002G366600 expressed protein -
9 Sobic.010G205400 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e
10 Sobic.005G177600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.001G128500 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.008G128200 - -
14 Sobic.001G508900 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
15 Sobic.005G183100 sulfotransferase domain containing protein, expressed -
16 Sobic.003G264600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.010G063801 - K02924: RP-L39e, large subunit ribosomal protein L39e
18 Sobic.003G363900 glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.007G211700 60S ribosomal protein L31, putative, expressed K02910: RP-L31e, large subunit ribosomal protein L31e
20 Sobic.009G187200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic002G384700 Sobic002G384700 Sobic008G172600 Sobic008G172600 Sobic002G384700--Sobic008G172600 Sobic004G045400 Sobic004G045400 Sobic002G384700--Sobic004G045400 Sobic008G027600 Sobic008G027600 Sobic002G384700--Sobic008G027600 Sobic001G114900 Sobic001G114900 Sobic002G384700--Sobic001G114900 Sobic006G158400 Sobic006G158400 Sobic002G384700--Sobic006G158400 Sobic010G211600 Sobic010G211600 Sobic002G384700--Sobic010G211600 Sobic003G060000 Sobic003G060000 Sobic002G384700--Sobic003G060000 Sobic002G366600 Sobic002G366600 Sobic002G384700--Sobic002G366600 Sobic010G205400 Sobic010G205400 Sobic002G384700--Sobic010G205400 Sobic009G187200 Sobic009G187200 Sobic008G172600--Sobic009G187200 Sobic003G255200 Sobic003G255200 Sobic008G172600--Sobic003G255200 Sobic002G004900 Sobic002G004900 Sobic008G172600--Sobic002G004900 Sobic004G046200 Sobic004G046200 Sobic008G172600--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic008G172600--Sobic006G044100 Sobic003G280200 Sobic003G280200 Sobic008G172600--Sobic003G280200 Sobic001G325400 Sobic001G325400 Sobic008G172600--Sobic001G325400 Sobic001G503100 Sobic001G503100 Sobic008G172600--Sobic001G503100 Sobic002G125700 Sobic002G125700 Sobic008G172600--Sobic002G125700 Sobic004G045400--Sobic010G205400 Sobic004G045400--Sobic006G158400 Sobic002G042000 Sobic002G042000 Sobic004G045400--Sobic002G042000 Sobic001G054500 Sobic001G054500 Sobic004G045400--Sobic001G054500 Sobic003G364300 Sobic003G364300 Sobic004G045400--Sobic003G364300 Sobic007G008100 Sobic007G008100 Sobic004G045400--Sobic007G008100 Sobic001G361600 Sobic001G361600 Sobic004G045400--Sobic001G361600 Sobic002G040900 Sobic002G040900 Sobic004G045400--Sobic002G040900 Sobic006G159100 Sobic006G159100 Sobic004G045400--Sobic006G159100 Sobic008G027600--Sobic006G158400 Sobic002G369400 Sobic002G369400 Sobic008G027600--Sobic002G369400 Sobic008G158100 Sobic008G158100 Sobic008G027600--Sobic008G158100 Sobic010G043900 Sobic010G043900 Sobic008G027600--Sobic010G043900 Sobic001G318500 Sobic001G318500 Sobic008G027600--Sobic001G318500 Sobic008G027600--Sobic001G114900 Sobic003G007600 Sobic003G007600 Sobic008G027600--Sobic003G007600 Sobic009G145500 Sobic009G145500 Sobic008G027600--Sobic009G145500 Sobic002G243000 Sobic002G243000 Sobic008G027600--Sobic002G243000 Sobic003G026400 Sobic003G026400 Sobic001G114900--Sobic003G026400 Sobic001G114900--Sobic008G027600 Sobic002G010900 Sobic002G010900 Sobic001G114900--Sobic002G010900 Sobic001G114900--Sobic002G369400 Sobic008G022000 Sobic008G022000 Sobic001G114900--Sobic008G022000 Sobic006G008000 Sobic006G008000 Sobic001G114900--Sobic006G008000 Sobic002G422300 Sobic002G422300 Sobic001G114900--Sobic002G422300 Sobic008G158332 Sobic008G158332 Sobic001G114900--Sobic008G158332 Sobic008G066200 Sobic008G066200 Sobic001G114900--Sobic008G066200 Sobic008G127933 Sobic008G127933 Sobic006G158400--Sobic008G127933 Sobic006G158400--Sobic008G027600 Sobic001G237900 Sobic001G237900 Sobic006G158400--Sobic001G237900 Sobic010G158500 Sobic010G158500 Sobic006G158400--Sobic010G158500 Sobic007G204700 Sobic007G204700 Sobic006G158400--Sobic007G204700 Sobic006G158400--Sobic003G007600 Sobic006G158400--Sobic010G043900 Sobic006G158400--Sobic001G318500 Sobic003G299300 Sobic003G299300 Sobic006G158400--Sobic003G299300 Sobic010G211600--Sobic002G004900 Sobic010G211600--Sobic003G280200 Sobic010G211600--Sobic008G027600 Sobic010G211600--Sobic008G158100 Sobic010G211600--Sobic008G172600 Sobic005G177600 Sobic005G177600 Sobic010G211600--Sobic005G177600 Sobic003G417700 Sobic003G417700 Sobic010G211600--Sobic003G417700 Sobic010G211600--Sobic001G318500 Sobic002G139300 Sobic002G139300 Sobic010G211600--Sobic002G139300 SobicK026900 SobicK026900 Sobic003G060000--SobicK026900 Sobic003G060000--Sobic001G114900 Sobic003G060000--Sobic008G027600 Sobic010G009900 Sobic010G009900 Sobic003G060000--Sobic010G009900 Sobic003G060000--Sobic010G158500 Sobic003G073460 Sobic003G073460 Sobic003G060000--Sobic003G073460 Sobic005G066100 Sobic005G066100 Sobic003G060000--Sobic005G066100 Sobic003G060000--Sobic006G158400 Sobic004G202400 Sobic004G202400 Sobic003G060000--Sobic004G202400 Sobic010G213700 Sobic010G213700 Sobic002G366600--Sobic010G213700 Sobic009G077800 Sobic009G077800 Sobic002G366600--Sobic009G077800 Sobic009G139400 Sobic009G139400 Sobic002G366600--Sobic009G139400 Sobic007G184600 Sobic007G184600 Sobic002G366600--Sobic007G184600 Sobic003G297600 Sobic003G297600 Sobic002G366600--Sobic003G297600 Sobic002G017800 Sobic002G017800 Sobic002G366600--Sobic002G017800 Sobic002G055700 Sobic002G055700 Sobic002G366600--Sobic002G055700 Sobic009G231000 Sobic009G231000 Sobic002G366600--Sobic009G231000 Sobic005G183100 Sobic005G183100 Sobic002G366600--Sobic005G183100 Sobic003G408100 Sobic003G408100 Sobic010G205400--Sobic003G408100 Sobic006G047400 Sobic006G047400 Sobic010G205400--Sobic006G047400 Sobic001G054900 Sobic001G054900 Sobic010G205400--Sobic001G054900 Sobic010G205400--Sobic004G045400 Sobic010G206200 Sobic010G206200 Sobic010G205400--Sobic010G206200 Sobic001G036900 Sobic001G036900 Sobic010G205400--Sobic001G036900 Sobic001G018900 Sobic001G018900 Sobic010G205400--Sobic001G018900 Sobic009G163800 Sobic009G163800 Sobic010G205400--Sobic009G163800 Sobic009G215200 Sobic009G215200 Sobic010G205400--Sobic009G215200
Octagon: transcription factors


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