Gene annotation
Transcriptome id Sobic.002G394100.1
Synonym Sb02g040950
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
GDSL-like lipase/acylhydrolase, putative, expressed
UniProt A0A1B6QFY3
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF235
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT1G28650 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os07g44780.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a048945
Brachypodium KQK07951 , KQK14967
Barley HORVU3Hr1G058440.12 , HORVU3Hr1G058440.13 , HORVU3Hr1G058440.10 , HORVU3Hr1G058440.11 , HORVU3Hr1G058440.16 , HORVU3Hr1G058440.17 , HORVU3Hr1G058440.14 , HORVU3Hr1G058440.19 , HORVU2Hr1G025800.5 , HORVU2Hr1G025800.4 , HORVU2Hr1G025800.1 , HORVU2Hr1G025800.3 , HORVU2Hr1G025800.2 , HORVU3Hr1G058440.9 , HORVU3Hr1G058440.1 , HORVU3Hr1G058440.2 , HORVU3Hr1G058440.3 , HORVU3Hr1G058440.4 , HORVU3Hr1G058440.5 , HORVU3Hr1G058440.6 , HORVU3Hr1G058440.7 , HORVU2Hr1G025810.2 , HORVU2Hr1G025810.1 , HORVU3Hr1G058440.20 , HORVU2Hr1G025860.3 , HORVU2Hr1G025860.2 , HORVU2Hr1G025860.1 , HORVU3Hr1G066310.4 , HORVU3Hr1G066310.1 , HORVU3Hr1G066310.3 , HORVU3Hr1G066310.2 , HORVU3Hr1G010920.3 , HORVU3Hr1G010920.2 , HORVU3Hr1G010920.1 , HORVU3Hr1G010920.4
Wheat TraesCS3D02G236100 , TraesCS3A02G057100 , TraesCS2B02G170900 , TraesCS2D02G150100 , TraesCS3B02G070100 , TraesCS2B02G170800 , TraesCS3B02G264900 , TraesCS2D02G149900 , TraesCS3D02G056800
Populus -


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cDNA sequences
Sobic.002G394100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G132900 PPDK(PubMedID : 19549309)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed K01006: pyruvate, orthophosphate dikinase
2 Sobic.010G109500 expressed protein -
3 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
4 Sobic.002G339200 Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08914: light-harvesting complex II chlorophyll a/b binding protein 3
5 Sobic.006G011100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G000500 isoflavone reductase, putative, expressed -
7 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
8 Sobic.007G029300 acyl-activating enzyme 14, putative, expressed K14760: acyl-activating enzyme 14
9 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
10 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
11 Sobic.006G264201 - K08917: light-harvesting complex II chlorophyll a/b binding protein 6
12 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
13 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
14 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
15 Sobic.001G078000 Cytochrome b6f subunit VII(PubMedID : 29017446)@cytochrome b6f complex subunit, putative, expressed -
16 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
17 Sobic.003G209800 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
18 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
19 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
20 Sobic.007G171600 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase


Gene co-expression network
sample Sobic002G394100 Sobic002G394100 Sobic009G132900 Sobic009G132900 Sobic002G394100--Sobic009G132900 Sobic010G109500 Sobic010G109500 Sobic002G394100--Sobic010G109500 Sobic001G448400 Sobic001G448400 Sobic002G394100--Sobic001G448400 Sobic002G339200 Sobic002G339200 Sobic002G394100--Sobic002G339200 Sobic006G011100 Sobic006G011100 Sobic002G394100--Sobic006G011100 Sobic002G000500 Sobic002G000500 Sobic002G394100--Sobic002G000500 Sobic006G234100 Sobic006G234100 Sobic002G394100--Sobic006G234100 Sobic007G029300 Sobic007G029300 Sobic002G394100--Sobic007G029300 Sobic010G241000 Sobic010G241000 Sobic002G394100--Sobic010G241000 Sobic009G132900--Sobic010G109500 Sobic009G132900--Sobic006G234100 Sobic009G132900--Sobic002G000500 Sobic009G132900--Sobic001G448400 Sobic009G132900--Sobic006G011100 Sobic009G132900--Sobic002G394100 Sobic003G057900 Sobic003G057900 Sobic009G132900--Sobic003G057900 Sobic009G132900--Sobic002G339200 Sobic006G136500 Sobic006G136500 Sobic009G132900--Sobic006G136500 Sobic010G109500--Sobic006G234100 Sobic010G109500--Sobic001G448400 Sobic010G109500--Sobic006G011100 Sobic003G209800 Sobic003G209800 Sobic010G109500--Sobic003G209800 Sobic010G276400 Sobic010G276400 Sobic010G109500--Sobic010G276400 Sobic010G109500--Sobic002G339200 Sobic010G109500--Sobic002G000500 Sobic003G052500 Sobic003G052500 Sobic010G109500--Sobic003G052500 Sobic004G343300 Sobic004G343300 Sobic010G109500--Sobic004G343300 Sobic001G448400--Sobic006G234100 Sobic001G448400--Sobic002G339200 Sobic001G448400--Sobic004G343300 Sobic002G329600 Sobic002G329600 Sobic001G448400--Sobic002G329600 Sobic001G448400--Sobic010G109500 Sobic006G264201 Sobic006G264201 Sobic001G448400--Sobic006G264201 Sobic001G448400--Sobic007G029300 Sobic001G448400--Sobic010G241000 Sobic001G078000 Sobic001G078000 Sobic001G448400--Sobic001G078000 Sobic002G339200--Sobic002G329600 Sobic002G339200--Sobic006G264201 Sobic002G339200--Sobic001G078000 Sobic002G339200--Sobic006G234100 Sobic009G234600 Sobic009G234600 Sobic002G339200--Sobic009G234600 Sobic002G339200--Sobic010G241000 Sobic002G339200--Sobic001G448400 Sobic002G339200--Sobic010G109500 Sobic002G339200--Sobic007G029300 Sobic006G011100--Sobic010G109500 Sobic006G011100--Sobic002G000500 Sobic001G274600 Sobic001G274600 Sobic006G011100--Sobic001G274600 Sobic006G011100--Sobic003G209800 Sobic006G011100--Sobic006G234100 Sobic006G011100--Sobic003G052500 Sobic006G011100--Sobic002G339200 Sobic006G011100--Sobic001G448400 Sobic002G040100 Sobic002G040100 Sobic006G011100--Sobic002G040100 Sobic002G000500--Sobic002G040100 Sobic002G000500--Sobic006G011100 Sobic002G000500--Sobic010G109500 Sobic002G000500--Sobic010G276400 Sobic003G199800 Sobic003G199800 Sobic002G000500--Sobic003G199800 Sobic008G038300 Sobic008G038300 Sobic002G000500--Sobic008G038300 Sobic007G171600 Sobic007G171600 Sobic002G000500--Sobic007G171600 Sobic002G000500--Sobic003G209800 Sobic002G000500--Sobic001G274600 Sobic006G234100--Sobic010G109500 Sobic006G234100--Sobic001G448400 Sobic006G234100--Sobic002G339200 Sobic006G234100--Sobic004G343300 Sobic006G234100--Sobic010G241000 Sobic006G234100--Sobic003G052500 Sobic006G234100--Sobic002G329600 Sobic006G234100--Sobic001G078000 Sobic006G234100--Sobic006G264201 Sobic007G029300--Sobic002G329600 Sobic007G029300--Sobic006G264201 Sobic007G029300--Sobic002G339200 Sobic007G029300--Sobic001G448400 Sobic007G029300--Sobic001G078000 Sobic004G238500 Sobic004G238500 Sobic007G029300--Sobic004G238500 Sobic007G029300--Sobic006G234100 Sobic007G029300--Sobic010G241000 Sobic003G099400 Sobic003G099400 Sobic007G029300--Sobic003G099400 Sobic010G241000--Sobic009G234600 Sobic010G241000--Sobic002G329600 Sobic001G177000 Sobic001G177000 Sobic010G241000--Sobic001G177000 Sobic010G241000--Sobic003G052500 Sobic010G241000--Sobic001G078000 Sobic004G056900 Sobic004G056900 Sobic010G241000--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic010G241000--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic010G241000--Sobic006G073500 Sobic002G030200 Sobic002G030200 Sobic010G241000--Sobic002G030200
Octagon: transcription factors


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