Gene annotation
Transcriptome id Sobic.003G049500.2
Synonym MRP3, Sb03g004300, ATMRP3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ABC transporter family protein, putative, expressed
UniProt A0A1B6Q1D5
Pfam PF00005 PF00664
Panther DB PTHR24223 PTHR24223:SF181
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G13080 : multidrug resistance-associated protein 3
RAP-DB (Rice) LOC_Os01g07870.1 : ABC transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035729 , Zm00025a053348
Brachypodium PNT73184 , PNT73183 , KQK02942
Barley HORVU3Hr1G085890.10 , HORVU3Hr1G085890.13 , HORVU3Hr1G085890.12 , HORVU3Hr1G085890.14 , HORVU3Hr1G024210.6 , HORVU3Hr1G024210.7 , HORVU3Hr1G024210.4 , HORVU3Hr1G024210.5 , HORVU3Hr1G024210.2 , HORVU3Hr1G024210.3 , HORVU3Hr1G024210.1 , HORVU3Hr1G024210.8 , HORVU3Hr1G024210.9 , HORVU3Hr1G085890.11 , HORVU3Hr1G085890.9 , HORVU3Hr1G085890.8 , HORVU3Hr1G085890.5 , HORVU3Hr1G085890.4 , HORVU3Hr1G085890.7 , HORVU3Hr1G085890.6 , HORVU3Hr1G085890.1 , HORVU3Hr1G085890.3 , HORVU3Hr1G085890.2 , HORVU3Hr1G024210.10
Wheat TraesCS2D02G420400 , TraesCS1B02G321200 , TraesCS1D02G309600 , TraesCS4A02G051100 , TraesCS3A02G129000 , TraesCS3D02G129900 , TraesCS3D02G129900 , TraesCS3D02G356300 , TraesCS3D02G356300 , TraesCS4D02G253300 , TraesCS3A02G362500 , TraesCS4D02G253300 , TraesCS4D02G253300 , TraesCS3B02G395000 , TraesCS3B02G395000 , TraesCS4B02G253200 , TraesCS3B02G148100 , TraesCS3B02G148100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G328100 TKL_IRAK_DUF26-lc.18 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.001G240800 tyrosine protein kinase domain containing protein, putative, expressed -
3 Sobic.007G159000 heat shock protein DnaJ, putative, expressed -
4 Sobic.002G327800 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.004G147200 - -
6 Sobic.004G227300 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
7 Sobic.002G327900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
8 Sobic.008G182900 thaumatin, putative, expressed -
9 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.008G146700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
11 Sobic.001G291200 - -
12 Sobic.002G327700 TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.003G368800 expressed protein -
14 Sobic.002G122600 ankyrin repeat domain containing protein, expressed -
15 Sobic.007G046500 60S ribosomal protein L18a-1, putative, expressed -
16 Sobic.004G258300 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
17 Sobic.006G197800 zinc-binding protein, putative, expressed -
18 Sobic.001G384500 leucine-rich repeat family protein, putative, expressed -
19 Sobic.008G072700 expressed protein -
20 Sobic.007G213300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G049500 Sobic003G049500 Sobic002G328100 Sobic002G328100 Sobic003G049500--Sobic002G328100 Sobic001G240800 Sobic001G240800 Sobic003G049500--Sobic001G240800 Sobic007G159000 Sobic007G159000 Sobic003G049500--Sobic007G159000 Sobic002G327800 Sobic002G327800 Sobic003G049500--Sobic002G327800 Sobic004G147200 Sobic004G147200 Sobic003G049500--Sobic004G147200 Sobic004G227300 Sobic004G227300 Sobic003G049500--Sobic004G227300 Sobic002G327900 Sobic002G327900 Sobic003G049500--Sobic002G327900 Sobic008G182900 Sobic008G182900 Sobic003G049500--Sobic008G182900 Sobic009G008100 Sobic009G008100 Sobic003G049500--Sobic009G008100 Sobic002G328100--Sobic003G049500 Sobic003G368800 Sobic003G368800 Sobic002G328100--Sobic003G368800 Sobic002G328100--Sobic004G147200 Sobic009G112400 Sobic009G112400 Sobic002G328100--Sobic009G112400 Sobic003G245900 Sobic003G245900 Sobic002G328100--Sobic003G245900 Sobic002G133100 Sobic002G133100 Sobic002G328100--Sobic002G133100 Sobic003G052600 Sobic003G052600 Sobic002G328100--Sobic003G052600 Sobic002G259400 Sobic002G259400 Sobic002G328100--Sobic002G259400 Sobic001G144600 Sobic001G144600 Sobic002G328100--Sobic001G144600 Sobic004G096100 Sobic004G096100 Sobic001G240800--Sobic004G096100 Sobic010G241300 Sobic010G241300 Sobic001G240800--Sobic010G241300 Sobic005G072200 Sobic005G072200 Sobic001G240800--Sobic005G072200 Sobic001G291200 Sobic001G291200 Sobic001G240800--Sobic001G291200 Sobic001G240800--Sobic004G227300 Sobic004G088100 Sobic004G088100 Sobic001G240800--Sobic004G088100 Sobic007G179750 Sobic007G179750 Sobic001G240800--Sobic007G179750 Sobic006G102400 Sobic006G102400 Sobic001G240800--Sobic006G102400 Sobic003G264901 Sobic003G264901 Sobic001G240800--Sobic003G264901 Sobic008G072700 Sobic008G072700 Sobic007G159000--Sobic008G072700 Sobic002G145000 Sobic002G145000 Sobic007G159000--Sobic002G145000 Sobic004G294700 Sobic004G294700 Sobic007G159000--Sobic004G294700 Sobic009G062500 Sobic009G062500 Sobic007G159000--Sobic009G062500 Sobic004G201700 Sobic004G201700 Sobic007G159000--Sobic004G201700 Sobic007G159000--Sobic004G147200 Sobic001G078400 Sobic001G078400 Sobic007G159000--Sobic001G078400 Sobic003G291400 Sobic003G291400 Sobic007G159000--Sobic003G291400 Sobic002G000700 Sobic002G000700 Sobic007G159000--Sobic002G000700 Sobic002G327700 Sobic002G327700 Sobic002G327800--Sobic002G327700 Sobic004G258300 Sobic004G258300 Sobic002G327800--Sobic004G258300 Sobic002G327800--Sobic002G327900 Sobic010G128000 Sobic010G128000 Sobic002G327800--Sobic010G128000 Sobic002G327800--Sobic008G182900 Sobic005G055900 Sobic005G055900 Sobic002G327800--Sobic005G055900 Sobic004G144700 Sobic004G144700 Sobic002G327800--Sobic004G144700 Sobic008G146700 Sobic008G146700 Sobic002G327800--Sobic008G146700 Sobic005G084300 Sobic005G084300 Sobic002G327800--Sobic005G084300 Sobic006G214400 Sobic006G214400 Sobic004G147200--Sobic006G214400 Sobic003G170200 Sobic003G170200 Sobic004G147200--Sobic003G170200 Sobic010G052500 Sobic010G052500 Sobic004G147200--Sobic010G052500 Sobic003G222300 Sobic003G222300 Sobic004G147200--Sobic003G222300 Sobic010G258300 Sobic010G258300 Sobic004G147200--Sobic010G258300 Sobic007G205600 Sobic007G205600 Sobic004G147200--Sobic007G205600 Sobic001G031300 Sobic001G031300 Sobic004G147200--Sobic001G031300 Sobic002G114700 Sobic002G114700 Sobic004G147200--Sobic002G114700 Sobic004G147200--Sobic003G368800 Sobic001G427500 Sobic001G427500 Sobic004G227300--Sobic001G427500 Sobic001G261597 Sobic001G261597 Sobic004G227300--Sobic001G261597 Sobic006G171700 Sobic006G171700 Sobic004G227300--Sobic006G171700 Sobic003G359900 Sobic003G359900 Sobic004G227300--Sobic003G359900 Sobic003G299000 Sobic003G299000 Sobic004G227300--Sobic003G299000 Sobic004G214100 Sobic004G214100 Sobic004G227300--Sobic004G214100 Sobic004G227300--Sobic002G259400 Sobic007G062500 Sobic007G062500 Sobic004G227300--Sobic007G062500 Sobic006G119800 Sobic006G119800 Sobic004G227300--Sobic006G119800 Sobic002G327900--Sobic004G258300 Sobic002G327900--Sobic002G327700 Sobic002G327900--Sobic002G327800 Sobic002G327900--Sobic010G128000 Sobic002G327900--Sobic008G146700 Sobic007G070400 Sobic007G070400 Sobic002G327900--Sobic007G070400 Sobic002G327900--Sobic005G084300 Sobic002G327900--Sobic008G182900 Sobic001G184100 Sobic001G184100 Sobic002G327900--Sobic001G184100 Sobic008G182900--Sobic008G146700 Sobic008G182900--Sobic002G327800 Sobic008G182900--Sobic004G258300 Sobic008G182900--Sobic002G327700 Sobic008G182900--Sobic002G327900 Sobic005G171100 Sobic005G171100 Sobic008G182900--Sobic005G171100 Sobic008G182900--Sobic005G084300 Sobic002G209100 Sobic002G209100 Sobic008G182900--Sobic002G209100 Sobic005G063900 Sobic005G063900 Sobic008G182900--Sobic005G063900 Sobic009G057700 Sobic009G057700 Sobic009G008100--Sobic009G057700 Sobic006G042200 Sobic006G042200 Sobic009G008100--Sobic006G042200 Sobic003G308700 Sobic003G308700 Sobic009G008100--Sobic003G308700 Sobic002G073900 Sobic002G073900 Sobic009G008100--Sobic002G073900 Sobic009G008100--Sobic004G227300 Sobic001G222250 Sobic001G222250 Sobic009G008100--Sobic001G222250 Sobic002G040800 Sobic002G040800 Sobic009G008100--Sobic002G040800 Sobic009G008100--Sobic001G261597 Sobic006G043300 Sobic006G043300 Sobic009G008100--Sobic006G043300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.