Gene annotation
Transcriptome id Sobic.003G094800.1
Synonym Sb03g007930
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pectinacetylesterase domain containing protein, expressed
UniProt C5XE79
Pfam PF03283
Panther DB PTHR21562 PTHR21562:SF19
NCBI CDD KOG4287; Pectin acetylesterase and similar proteins
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G09410 : Pectinacetylesterase family protein
RAP-DB (Rice) LOC_Os01g66850.1 : pectinacetylesterase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023681
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.003G094800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G062900 H-BTB8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
2 Sobic.010G027300 DNA binding protein, putative, expressed -
3 Sobic.001G161000 AGG2, putative, expressed -
4 Sobic.005G120500 expressed protein -
5 Sobic.002G252000 CHIT13 - Chitinase family protein precursor, expressed -
6 Sobic.001G453900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SEC14 cytosolic factor family protein, putative, expressed -
7 Sobic.006G142332 - -
8 Sobic.003G435000 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
9 Sobic.001G168600 serpin domain containing protein, putative, expressed K13963: serpin B
10 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
12 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
13 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
14 Sobic.006G236500 RNA recognition motif containing protein, putative, expressed -
15 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
16 Sobic.006G282300 - -
17 Sobic.002G128800 fiber protein Fb34, putative, expressed -
18 Sobic.008G102800 expressed protein -
19 Sobic.002G361700 expressed protein -
20 Sobic.004G085700 expressed protein -


Gene co-expression network
sample Sobic003G094800 Sobic003G094800 Sobic008G062900 Sobic008G062900 Sobic003G094800--Sobic008G062900 Sobic010G027300 Sobic010G027300 Sobic003G094800--Sobic010G027300 Sobic001G161000 Sobic001G161000 Sobic003G094800--Sobic001G161000 Sobic005G120500 Sobic005G120500 Sobic003G094800--Sobic005G120500 Sobic002G252000 Sobic002G252000 Sobic003G094800--Sobic002G252000 Sobic001G453900 Sobic001G453900 Sobic003G094800--Sobic001G453900 Sobic006G142332 Sobic006G142332 Sobic003G094800--Sobic006G142332 Sobic003G435000 Sobic003G435000 Sobic003G094800--Sobic003G435000 Sobic001G168600 Sobic001G168600 Sobic003G094800--Sobic001G168600 Sobic005G022500 Sobic005G022500 Sobic008G062900--Sobic005G022500 Sobic001G348800 Sobic001G348800 Sobic008G062900--Sobic001G348800 Sobic001G002800 Sobic001G002800 Sobic008G062900--Sobic001G002800 Sobic006G183900 Sobic006G183900 Sobic008G062900--Sobic006G183900 Sobic001G503000 Sobic001G503000 Sobic008G062900--Sobic001G503000 Sobic006G028400 Sobic006G028400 Sobic008G062900--Sobic006G028400 Sobic005G115300 Sobic005G115300 Sobic008G062900--Sobic005G115300 Sobic007G090472 Sobic007G090472 Sobic008G062900--Sobic007G090472 Sobic003G287200 Sobic003G287200 Sobic008G062900--Sobic003G287200 Sobic003G205600 Sobic003G205600 Sobic010G027300--Sobic003G205600 Sobic001G264000 Sobic001G264000 Sobic010G027300--Sobic001G264000 Sobic004G348800 Sobic004G348800 Sobic010G027300--Sobic004G348800 Sobic003G093700 Sobic003G093700 Sobic010G027300--Sobic003G093700 Sobic003G269600 Sobic003G269600 Sobic010G027300--Sobic003G269600 Sobic010G212500 Sobic010G212500 Sobic010G027300--Sobic010G212500 Sobic002G404100 Sobic002G404100 Sobic010G027300--Sobic002G404100 Sobic001G430100 Sobic001G430100 Sobic010G027300--Sobic001G430100 Sobic004G249000 Sobic004G249000 Sobic010G027300--Sobic004G249000 Sobic004G024100 Sobic004G024100 Sobic001G161000--Sobic004G024100 Sobic006G197100 Sobic006G197100 Sobic001G161000--Sobic006G197100 Sobic001G147900 Sobic001G147900 Sobic001G161000--Sobic001G147900 Sobic002G185800 Sobic002G185800 Sobic001G161000--Sobic002G185800 Sobic007G165400 Sobic007G165400 Sobic001G161000--Sobic007G165400 Sobic003G079400 Sobic003G079400 Sobic001G161000--Sobic003G079400 Sobic003G368600 Sobic003G368600 Sobic001G161000--Sobic003G368600 Sobic001G082600 Sobic001G082600 Sobic001G161000--Sobic001G082600 Sobic007G176000 Sobic007G176000 Sobic001G161000--Sobic007G176000 Sobic005G080900 Sobic005G080900 Sobic005G120500--Sobic005G080900 Sobic010G265900 Sobic010G265900 Sobic005G120500--Sobic010G265900 Sobic009G216800 Sobic009G216800 Sobic005G120500--Sobic009G216800 Sobic008G102800 Sobic008G102800 Sobic005G120500--Sobic008G102800 Sobic007G150800 Sobic007G150800 Sobic005G120500--Sobic007G150800 Sobic009G173500 Sobic009G173500 Sobic005G120500--Sobic009G173500 Sobic003G122200 Sobic003G122200 Sobic005G120500--Sobic003G122200 Sobic001G347901 Sobic001G347901 Sobic005G120500--Sobic001G347901 Sobic001G157800 Sobic001G157800 Sobic005G120500--Sobic001G157800 Sobic002G128800 Sobic002G128800 Sobic002G252000--Sobic002G128800 Sobic002G338400 Sobic002G338400 Sobic002G252000--Sobic002G338400 Sobic001G418100 Sobic001G418100 Sobic002G252000--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G252000--Sobic002G396400 Sobic006G156000 Sobic006G156000 Sobic002G252000--Sobic006G156000 Sobic001G038300 Sobic001G038300 Sobic002G252000--Sobic001G038300 Sobic001G107100 Sobic001G107100 Sobic002G252000--Sobic001G107100 Sobic003G443300 Sobic003G443300 Sobic002G252000--Sobic003G443300 Sobic003G219800 Sobic003G219800 Sobic002G252000--Sobic003G219800 Sobic003G121500 Sobic003G121500 Sobic001G453900--Sobic003G121500 Sobic002G001700 Sobic002G001700 Sobic001G453900--Sobic002G001700 Sobic001G453900--Sobic007G165400 Sobic004G126700 Sobic004G126700 Sobic001G453900--Sobic004G126700 Sobic007G176100 Sobic007G176100 Sobic001G453900--Sobic007G176100 Sobic001G453900--Sobic007G176000 Sobic010G110800 Sobic010G110800 Sobic001G453900--Sobic010G110800 Sobic010G067400 Sobic010G067400 Sobic001G453900--Sobic010G067400 Sobic008G055100 Sobic008G055100 Sobic001G453900--Sobic008G055100 Sobic004G069200 Sobic004G069200 Sobic006G142332--Sobic004G069200 Sobic006G142332--Sobic001G161000 Sobic003G366600 Sobic003G366600 Sobic006G142332--Sobic003G366600 Sobic004G262200 Sobic004G262200 Sobic006G142332--Sobic004G262200 Sobic006G157900 Sobic006G157900 Sobic006G142332--Sobic006G157900 Sobic006G142332--Sobic004G024100 Sobic006G059700 Sobic006G059700 Sobic006G142332--Sobic006G059700 Sobic002G231600 Sobic002G231600 Sobic006G142332--Sobic002G231600 Sobic006G142332--Sobic001G453900 Sobic004G242100 Sobic004G242100 Sobic003G435000--Sobic004G242100 Sobic009G016500 Sobic009G016500 Sobic003G435000--Sobic009G016500 Sobic001G370700 Sobic001G370700 Sobic003G435000--Sobic001G370700 Sobic002G308300 Sobic002G308300 Sobic003G435000--Sobic002G308300 Sobic003G435000--Sobic001G347901 Sobic002G180300 Sobic002G180300 Sobic003G435000--Sobic002G180300 Sobic002G260200 Sobic002G260200 Sobic003G435000--Sobic002G260200 Sobic006G231500 Sobic006G231500 Sobic003G435000--Sobic006G231500 Sobic007G013900 Sobic007G013900 Sobic003G435000--Sobic007G013900 Sobic003G400800 Sobic003G400800 Sobic001G168600--Sobic003G400800 Sobic004G282700 Sobic004G282700 Sobic001G168600--Sobic004G282700 Sobic007G076300 Sobic007G076300 Sobic001G168600--Sobic007G076300 Sobic001G168600--Sobic002G252000 Sobic006G008400 Sobic006G008400 Sobic001G168600--Sobic006G008400 Sobic003G410500 Sobic003G410500 Sobic001G168600--Sobic003G410500 Sobic009G236100 Sobic009G236100 Sobic001G168600--Sobic009G236100 Sobic001G096100 Sobic001G096100 Sobic001G168600--Sobic001G096100 Sobic003G130600 Sobic003G130600 Sobic001G168600--Sobic003G130600
Octagon: transcription factors


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