Gene annotation
Transcriptome id Sobic.003G204600.1
Synonym AGP22, Sb03g026630, ATAGP22
Functional annotation expressed protein
UniProt C5XPJ9
Pfam PF06376
Panther DB PTHR33374 PTHR33374:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53250 : arabinogalactan protein 22
RAP-DB (Rice) LOC_Os01g40880.1 : hypothetical protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G008200 sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
2 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
3 Sobic.006G080700 CSLH1 - cellulose synthase-like family H, expressed -
4 Sobic.009G007300 expressed protein -
5 Sobic.002G180800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
6 Sobic.010G270200 rhodanese-like domain containing protein, putative, expressed -
7 Sobic.004G176200 SacI homology domain containing protein, expressed -
8 Sobic.006G132600 - -
9 Sobic.008G054200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@csAtPR5, putative, expressed -
10 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
11 Sobic.004G253200 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
12 Sobic.004G120500 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
13 Sobic.006G168200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
14 Sobic.003G385300 Ser/Thr protein phosphatase family protein, putative, expressed -
15 Sobic.008G097900 protein kinase domain containing protein, expressed -
16 Sobic.004G064200 STE_PAK_Ste20_STLK.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
17 Sobic.001G225800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CCT motif family protein, expressed -
18 Sobic.001G342101 - -
19 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
20 Sobic.001G213666 - -


Gene co-expression network
sample Sobic003G204600 Sobic003G204600 Sobic004G008200 Sobic004G008200 Sobic003G204600--Sobic004G008200 Sobic004G077300 Sobic004G077300 Sobic003G204600--Sobic004G077300 Sobic006G080700 Sobic006G080700 Sobic003G204600--Sobic006G080700 Sobic009G007300 Sobic009G007300 Sobic003G204600--Sobic009G007300 Sobic002G180800 Sobic002G180800 Sobic003G204600--Sobic002G180800 Sobic010G270200 Sobic010G270200 Sobic003G204600--Sobic010G270200 Sobic004G176200 Sobic004G176200 Sobic003G204600--Sobic004G176200 Sobic006G132600 Sobic006G132600 Sobic003G204600--Sobic006G132600 Sobic008G054200 Sobic008G054200 Sobic003G204600--Sobic008G054200 Sobic010G274100 Sobic010G274100 Sobic004G008200--Sobic010G274100 Sobic004G134900 Sobic004G134900 Sobic004G008200--Sobic004G134900 Sobic008G057800 Sobic008G057800 Sobic004G008200--Sobic008G057800 Sobic005G035250 Sobic005G035250 Sobic004G008200--Sobic005G035250 Sobic008G011901 Sobic008G011901 Sobic004G008200--Sobic008G011901 Sobic002G145400 Sobic002G145400 Sobic004G008200--Sobic002G145400 Sobic008G097800 Sobic008G097800 Sobic004G008200--Sobic008G097800 Sobic003G195400 Sobic003G195400 Sobic004G008200--Sobic003G195400 Sobic005G035200 Sobic005G035200 Sobic004G008200--Sobic005G035200 Sobic001G149000 Sobic001G149000 Sobic004G077300--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic004G077300--Sobic003G385300 Sobic008G152700 Sobic008G152700 Sobic004G077300--Sobic008G152700 Sobic004G077300--Sobic004G176200 Sobic001G378800 Sobic001G378800 Sobic004G077300--Sobic001G378800 Sobic004G077300--Sobic006G080700 Sobic001G384200 Sobic001G384200 Sobic004G077300--Sobic001G384200 Sobic004G350700 Sobic004G350700 Sobic004G077300--Sobic004G350700 Sobic004G077300--Sobic002G180800 Sobic006G080700--Sobic009G007300 Sobic004G064200 Sobic004G064200 Sobic006G080700--Sobic004G064200 Sobic001G225800 Sobic001G225800 Sobic006G080700--Sobic001G225800 Sobic008G078200 Sobic008G078200 Sobic006G080700--Sobic008G078200 Sobic010G114200 Sobic010G114200 Sobic006G080700--Sobic010G114200 Sobic005G110460 Sobic005G110460 Sobic006G080700--Sobic005G110460 Sobic009G068400 Sobic009G068400 Sobic006G080700--Sobic009G068400 Sobic009G152000 Sobic009G152000 Sobic006G080700--Sobic009G152000 Sobic010G179600 Sobic010G179600 Sobic006G080700--Sobic010G179600 Sobic009G007300--Sobic006G080700 Sobic009G007300--Sobic001G225800 Sobic009G007300--Sobic008G078200 Sobic009G007300--Sobic004G064200 Sobic009G007300--Sobic009G068400 Sobic007G198900 Sobic007G198900 Sobic009G007300--Sobic007G198900 Sobic009G007300--Sobic010G179600 Sobic002G060000 Sobic002G060000 Sobic009G007300--Sobic002G060000 Sobic009G007300--Sobic010G114200 Sobic002G180800--Sobic004G064200 Sobic002G180800--Sobic006G080700 Sobic002G180800--Sobic010G114200 Sobic002G180800--Sobic008G054200 Sobic002G074800 Sobic002G074800 Sobic002G180800--Sobic002G074800 Sobic002G180800--Sobic009G007300 Sobic003G014200 Sobic003G014200 Sobic002G180800--Sobic003G014200 Sobic002G103800 Sobic002G103800 Sobic002G180800--Sobic002G103800 Sobic003G024400 Sobic003G024400 Sobic002G180800--Sobic003G024400 Sobic010G270200--Sobic009G007300 Sobic010G270200--Sobic006G080700 Sobic010G270200--Sobic004G008200 Sobic010G270200--Sobic002G180800 Sobic010G270200--Sobic006G132600 Sobic010G270200--Sobic004G134900 Sobic006G166400 Sobic006G166400 Sobic010G270200--Sobic006G166400 Sobic010G270200--Sobic001G225800 Sobic001G367301 Sobic001G367301 Sobic010G270200--Sobic001G367301 Sobic004G176200--Sobic003G385300 Sobic004G176200--Sobic002G103800 Sobic007G004300 Sobic007G004300 Sobic004G176200--Sobic007G004300 Sobic004G176200--Sobic004G077300 Sobic004G176200--Sobic004G064200 Sobic001G257800 Sobic001G257800 Sobic004G176200--Sobic001G257800 Sobic004G176200--Sobic002G180800 Sobic001G356200 Sobic001G356200 Sobic004G176200--Sobic001G356200 Sobic004G176200--Sobic006G080700 Sobic006G132600--Sobic002G180800 Sobic006G132600--Sobic010G270200 Sobic010G158000 Sobic010G158000 Sobic006G132600--Sobic010G158000 Sobic003G038400 Sobic003G038400 Sobic006G132600--Sobic003G038400 Sobic006G132600--Sobic004G077300 Sobic006G132600--Sobic009G007300 Sobic009G055500 Sobic009G055500 Sobic006G132600--Sobic009G055500 Sobic006G132600--Sobic006G080700 Sobic006G132600--Sobic008G054200 Sobic008G054200--Sobic008G078200 Sobic008G054200--Sobic004G064200 Sobic008G054200--Sobic003G014200 Sobic004G168200 Sobic004G168200 Sobic008G054200--Sobic004G168200 Sobic008G054200--Sobic009G068400 Sobic008G054200--Sobic007G198900 Sobic008G054200--Sobic002G180800 Sobic004G046700 Sobic004G046700 Sobic008G054200--Sobic004G046700 Sobic001G211700 Sobic001G211700 Sobic008G054200--Sobic001G211700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.