Gene annotation
Transcriptome id Sobic.003G209600.2,Sobic.003G209600.1
Synonym Sb03g027020
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phosphoethanolamine/phosphocholine phosphatase, putative, expressed
UniProt A0A1W0VYC2 , C5XQ80
Pfam PF06888
Panther DB PTHR20889 PTHR20889:SF3
NCBI CDD KOG3120; Predicted haloacid dehalogenase-like hydrolase
KEGG Orthology K13248; pyridoxal phosphate phosphatase PHOSPHO2
Gene Ontology GO:0016791; phosphatase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G29530 : Pyridoxal phosphate phosphatase-related protein
RAP-DB (Rice) LOC_Os01g41660.1 : phosphoethanolamine/phosphocholine phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a038455 , Zm00025a028622
Brachypodium KQK08589
Barley -
Wheat TraesCS3B02G245400 , TraesCS3D02G217400 , TraesCS3A02G215400 , TraesCS3A02G215400
Populus -


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cDNA sequences
Sobic.003G209600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G127800 nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
2 Sobic.005G061000 ABC-2 type transporter domain containing protein, expressed -
3 Sobic.005G121200 "similar to HVA22-like protein e, putative, expressed"(PubMedID : 29862293)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
4 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
5 Sobic.010G165200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G388400 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@haloacid dehalogenase-like hydrolase family protein, putative, expressed K18551: pyrimidine and pyridine-specific 5'-nucleotidase
7 Sobic.002G337800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.009G073000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsGrx_C15 - glutaredoxin subgroup III, expressed -
9 Sobic.007G152800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Glutamate decarboxylase("PubMedID : 26759170,PubMedID : 24597475")@decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
10 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
11 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
12 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -
13 Sobic.004G047700 expressed protein -
14 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
15 Sobic.002G020900 GCRP5 - Glycine and cysteine rich family protein precursor, expressed -
16 Sobic.001G168500 serpin domain containing protein, putative, expressed K13963: serpin B
17 Sobic.005G061033 - -
18 Sobic.010G165300 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
19 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
20 Sobic.004G222800 expressed protein -


Gene co-expression network
sample Sobic003G209600 Sobic003G209600 Sobic001G127800 Sobic001G127800 Sobic003G209600--Sobic001G127800 Sobic005G061000 Sobic005G061000 Sobic003G209600--Sobic005G061000 Sobic005G121200 Sobic005G121200 Sobic003G209600--Sobic005G121200 Sobic006G064800 Sobic006G064800 Sobic003G209600--Sobic006G064800 Sobic010G165200 Sobic010G165200 Sobic003G209600--Sobic010G165200 Sobic002G388400 Sobic002G388400 Sobic003G209600--Sobic002G388400 Sobic002G337800 Sobic002G337800 Sobic003G209600--Sobic002G337800 Sobic009G073000 Sobic009G073000 Sobic003G209600--Sobic009G073000 Sobic007G152800 Sobic007G152800 Sobic003G209600--Sobic007G152800 Sobic001G127800--Sobic005G121200 Sobic001G127800--Sobic010G165200 Sobic001G127800--Sobic007G152800 Sobic001G127800--Sobic002G337800 Sobic009G072200 Sobic009G072200 Sobic001G127800--Sobic009G072200 Sobic001G127800--Sobic009G073000 Sobic001G342600 Sobic001G342600 Sobic001G127800--Sobic001G342600 Sobic001G127800--Sobic006G064800 Sobic001G127800--Sobic003G209600 Sobic005G061033 Sobic005G061033 Sobic005G061000--Sobic005G061033 Sobic002G037400 Sobic002G037400 Sobic005G061000--Sobic002G037400 Sobic007G143100 Sobic007G143100 Sobic005G061000--Sobic007G143100 Sobic001G155300 Sobic001G155300 Sobic005G061000--Sobic001G155300 Sobic005G016900 Sobic005G016900 Sobic005G061000--Sobic005G016900 Sobic003G397400 Sobic003G397400 Sobic005G061000--Sobic003G397400 Sobic007G169600 Sobic007G169600 Sobic005G061000--Sobic007G169600 Sobic007G143200 Sobic007G143200 Sobic005G061000--Sobic007G143200 Sobic002G325600 Sobic002G325600 Sobic005G061000--Sobic002G325600 Sobic005G121200--Sobic001G127800 Sobic001G460300 Sobic001G460300 Sobic005G121200--Sobic001G460300 Sobic005G121200--Sobic002G337800 Sobic003G278700 Sobic003G278700 Sobic005G121200--Sobic003G278700 Sobic009G030200 Sobic009G030200 Sobic005G121200--Sobic009G030200 Sobic001G396400 Sobic001G396400 Sobic005G121200--Sobic001G396400 Sobic003G198200 Sobic003G198200 Sobic005G121200--Sobic003G198200 Sobic005G121200--Sobic007G152800 Sobic003G198150 Sobic003G198150 Sobic005G121200--Sobic003G198150 Sobic006G087900 Sobic006G087900 Sobic006G064800--Sobic006G087900 Sobic005G195600 Sobic005G195600 Sobic006G064800--Sobic005G195600 Sobic003G374700 Sobic003G374700 Sobic006G064800--Sobic003G374700 Sobic002G362900 Sobic002G362900 Sobic006G064800--Sobic002G362900 Sobic010G161450 Sobic010G161450 Sobic006G064800--Sobic010G161450 Sobic001G012800 Sobic001G012800 Sobic006G064800--Sobic001G012800 Sobic001G051800 Sobic001G051800 Sobic006G064800--Sobic001G051800 Sobic010G236500 Sobic010G236500 Sobic006G064800--Sobic010G236500 Sobic006G064800--Sobic009G073000 Sobic010G165200--Sobic001G127800 Sobic010G165200--Sobic007G152800 Sobic010G165200--Sobic009G072200 Sobic010G165200--Sobic005G121200 Sobic004G333100 Sobic004G333100 Sobic010G165200--Sobic004G333100 Sobic001G132800 Sobic001G132800 Sobic010G165200--Sobic001G132800 Sobic007G054500 Sobic007G054500 Sobic010G165200--Sobic007G054500 Sobic001G048900 Sobic001G048900 Sobic010G165200--Sobic001G048900 Sobic010G165200--Sobic006G064800 Sobic003G032900 Sobic003G032900 Sobic002G388400--Sobic003G032900 Sobic003G238000 Sobic003G238000 Sobic002G388400--Sobic003G238000 Sobic004G059900 Sobic004G059900 Sobic002G388400--Sobic004G059900 Sobic001G082900 Sobic001G082900 Sobic002G388400--Sobic001G082900 Sobic001G446200 Sobic001G446200 Sobic002G388400--Sobic001G446200 Sobic001G442900 Sobic001G442900 Sobic002G388400--Sobic001G442900 Sobic002G388400--Sobic001G460300 Sobic001G080300 Sobic001G080300 Sobic002G388400--Sobic001G080300 Sobic004G278200 Sobic004G278200 Sobic002G388400--Sobic004G278200 Sobic005G231700 Sobic005G231700 Sobic002G337800--Sobic005G231700 Sobic008G159100 Sobic008G159100 Sobic002G337800--Sobic008G159100 Sobic002G337800--Sobic006G087900 Sobic001G063600 Sobic001G063600 Sobic002G337800--Sobic001G063600 Sobic007G057100 Sobic007G057100 Sobic002G337800--Sobic007G057100 Sobic002G337800--Sobic001G051800 Sobic002G210300 Sobic002G210300 Sobic002G337800--Sobic002G210300 Sobic008G000500 Sobic008G000500 Sobic002G337800--Sobic008G000500 Sobic002G337800--Sobic005G121200 Sobic009G073000--Sobic006G087900 Sobic003G188000 Sobic003G188000 Sobic009G073000--Sobic003G188000 Sobic009G073000--Sobic005G231700 Sobic009G073000--Sobic002G362900 Sobic009G073000--Sobic006G064800 Sobic010G071700 Sobic010G071700 Sobic009G073000--Sobic010G071700 Sobic009G073000--Sobic001G063600 Sobic003G225900 Sobic003G225900 Sobic009G073000--Sobic003G225900 Sobic002G293300 Sobic002G293300 Sobic009G073000--Sobic002G293300 Sobic007G152800--Sobic010G165200 Sobic007G152800--Sobic005G121200 Sobic007G152800--Sobic001G127800 Sobic007G152800--Sobic001G048900 Sobic002G359000 Sobic002G359000 Sobic007G152800--Sobic002G359000 Sobic008G087500 Sobic008G087500 Sobic007G152800--Sobic008G087500 Sobic003G244100 Sobic003G244100 Sobic007G152800--Sobic003G244100 Sobic007G152800--Sobic009G072200 Sobic002G173800 Sobic002G173800 Sobic007G152800--Sobic002G173800
Octagon: transcription factors


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