Gene annotation
Transcriptome id Sobic.003G236100.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q519
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G08000 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os01g68524.2 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a039368
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G346200 tetratricopeptide-like helical, putative, expressed -
2 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
3 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.005G221550 - -
5 Sobic.006G033380 - -
6 Sobic.002G059800 - -
7 Sobic.005G148400 OsFBX404 - F-box domain containing protein, expressed -
8 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
9 Sobic.010G190900 pentatricopeptide, putative, expressed -
10 Sobic.001G151300 pentatricopeptide, putative, expressed -
11 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
12 Sobic.003G292932 - -
13 Sobic.008G041000 expressed protein -
14 Sobic.006G099600 - -
15 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.008G012700 GRAS family transcription factor containing protein, expressed -
17 Sobic.003G133300 - -
18 Sobic.010G123700 expressed protein -
19 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.003G203100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G236100 Sobic003G236100 Sobic004G346200 Sobic004G346200 Sobic003G236100--Sobic004G346200 Sobic001G122200 Sobic001G122200 Sobic003G236100--Sobic001G122200 Sobic001G001200 Sobic001G001200 Sobic003G236100--Sobic001G001200 Sobic005G221550 Sobic005G221550 Sobic003G236100--Sobic005G221550 Sobic006G033380 Sobic006G033380 Sobic003G236100--Sobic006G033380 Sobic002G059800 Sobic002G059800 Sobic003G236100--Sobic002G059800 Sobic005G148400 Sobic005G148400 Sobic003G236100--Sobic005G148400 Sobic004G217900 Sobic004G217900 Sobic003G236100--Sobic004G217900 Sobic010G190900 Sobic010G190900 Sobic003G236100--Sobic010G190900 Sobic009G116400 Sobic009G116400 Sobic004G346200--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic004G346200--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic004G346200--Sobic009G155400 Sobic007G087900 Sobic007G087900 Sobic004G346200--Sobic007G087900 Sobic008G082800 Sobic008G082800 Sobic004G346200--Sobic008G082800 Sobic004G346200--Sobic010G190900 Sobic005G210700 Sobic005G210700 Sobic004G346200--Sobic005G210700 Sobic004G346200--Sobic006G033380 Sobic006G262700 Sobic006G262700 Sobic004G346200--Sobic006G262700 Sobic008G163400 Sobic008G163400 Sobic001G122200--Sobic008G163400 Sobic010G068900 Sobic010G068900 Sobic001G122200--Sobic010G068900 Sobic004G282500 Sobic004G282500 Sobic001G122200--Sobic004G282500 Sobic004G241000 Sobic004G241000 Sobic001G122200--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic001G122200--Sobic006G262800 Sobic001G268300 Sobic001G268300 Sobic001G122200--Sobic001G268300 Sobic001G396800 Sobic001G396800 Sobic001G122200--Sobic001G396800 Sobic006G069100 Sobic006G069100 Sobic001G122200--Sobic006G069100 Sobic001G149100 Sobic001G149100 Sobic001G122200--Sobic001G149100 Sobic003G051500 Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic003G419800 Sobic003G419800 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic003G183900 Sobic003G183900 Sobic001G001200--Sobic003G183900 Sobic001G081300 Sobic001G081300 Sobic001G001200--Sobic001G081300 Sobic007G179600 Sobic007G179600 Sobic001G001200--Sobic007G179600 Sobic010G083900 Sobic010G083900 Sobic001G001200--Sobic010G083900 Sobic005G085100 Sobic005G085100 Sobic005G221550--Sobic005G085100 Sobic005G134501 Sobic005G134501 Sobic005G221550--Sobic005G134501 Sobic005G221550--Sobic005G148400 Sobic008G045600 Sobic008G045600 Sobic005G221550--Sobic008G045600 Sobic005G170800 Sobic005G170800 Sobic005G221550--Sobic005G170800 Sobic008G106400 Sobic008G106400 Sobic005G221550--Sobic008G106400 Sobic005G148500 Sobic005G148500 Sobic005G221550--Sobic005G148500 Sobic005G142200 Sobic005G142200 Sobic005G221550--Sobic005G142200 Sobic006G190800 Sobic006G190800 Sobic005G221550--Sobic006G190800 Sobic004G166301 Sobic004G166301 Sobic006G033380--Sobic004G166301 Sobic006G235650 Sobic006G235650 Sobic006G033380--Sobic006G235650 Sobic010G100432 Sobic010G100432 Sobic006G033380--Sobic010G100432 Sobic006G033380--Sobic004G346200 Sobic006G033380--Sobic007G087900 Sobic007G104300 Sobic007G104300 Sobic006G033380--Sobic007G104300 Sobic004G291600 Sobic004G291600 Sobic006G033380--Sobic004G291600 Sobic006G033380--Sobic009G116400 Sobic006G033380--Sobic005G148400 Sobic002G059800--Sobic008G106400 Sobic002G431200 Sobic002G431200 Sobic002G059800--Sobic002G431200 Sobic002G344301 Sobic002G344301 Sobic002G059800--Sobic002G344301 Sobic005G043400 Sobic005G043400 Sobic002G059800--Sobic005G043400 Sobic006G099501 Sobic006G099501 Sobic002G059800--Sobic006G099501 Sobic007G199300 Sobic007G199300 Sobic002G059800--Sobic007G199300 Sobic009G121750 Sobic009G121750 Sobic002G059800--Sobic009G121750 Sobic005G127300 Sobic005G127300 Sobic002G059800--Sobic005G127300 Sobic008G007300 Sobic008G007300 Sobic002G059800--Sobic008G007300 Sobic005G148400--Sobic005G085100 Sobic005G148400--Sobic005G148500 Sobic005G148400--Sobic005G043400 Sobic005G148400--Sobic005G221550 Sobic002G060500 Sobic002G060500 Sobic005G148400--Sobic002G060500 Sobic009G101600 Sobic009G101600 Sobic005G148400--Sobic009G101600 Sobic005G148400--Sobic005G170800 Sobic005G148400--Sobic005G142200 Sobic002G128400 Sobic002G128400 Sobic005G148400--Sobic002G128400 Sobic004G217900--Sobic009G155400 Sobic004G217900--Sobic008G163400 Sobic004G217900--Sobic009G116400 Sobic001G187800 Sobic001G187800 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic004G217900--Sobic003G051500 Sobic004G217900--Sobic004G241000 Sobic004G217900--Sobic010G190900 Sobic004G217900--Sobic001G149100 Sobic010G190900--Sobic010G068900 Sobic010G190900--Sobic004G241000 Sobic010G190900--Sobic006G069100 Sobic004G256900 Sobic004G256900 Sobic010G190900--Sobic004G256900 Sobic009G253101 Sobic009G253101 Sobic010G190900--Sobic009G253101 Sobic010G190900--Sobic009G116400 Sobic010G190900--Sobic009G155400 Sobic010G190900--Sobic007G087900 Sobic002G172500 Sobic002G172500 Sobic010G190900--Sobic002G172500
Octagon: transcription factors


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