Gene annotation
Transcriptome id Sobic.003G258200.1
Synonym Sb03g031270, LACS4
Functional annotation AMP-binding enzyme, putative, expressed
UniProt C5XGR8
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF187
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT4G23850 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os01g48910.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a028029 , Zm00025a049978
Brachypodium KQJ92572
Barley HORVU5Hr1G046950.31 , HORVU5Hr1G046950.30 , HORVU5Hr1G046950.33 , HORVU5Hr1G046950.32 , HORVU5Hr1G046950.35 , HORVU5Hr1G046950.34 , HORVU5Hr1G046950.9 , HORVU5Hr1G046950.8 , HORVU5Hr1G046950.7 , HORVU5Hr1G046950.6 , HORVU5Hr1G046950.5 , HORVU5Hr1G046950.4 , HORVU5Hr1G046950.3 , HORVU5Hr1G046950.2 , HORVU5Hr1G046950.1 , HORVU7Hr1G024350.26 , HORVU7Hr1G024350.27 , HORVU7Hr1G024350.24 , HORVU7Hr1G024350.25 , HORVU7Hr1G024350.22 , HORVU7Hr1G024350.23 , HORVU7Hr1G024350.20 , HORVU7Hr1G024350.21 , HORVU7Hr1G024350.29 , HORVU7Hr1G024350.7 , HORVU7Hr1G024350.6 , HORVU7Hr1G024350.4 , HORVU7Hr1G024350.3 , HORVU7Hr1G024350.2 , HORVU7Hr1G024350.1 , HORVU7Hr1G024350.9 , HORVU7Hr1G024350.8 , HORVU7Hr1G024350.15 , HORVU7Hr1G024350.14 , HORVU7Hr1G024350.13 , HORVU7Hr1G024350.12 , HORVU7Hr1G024350.11 , HORVU7Hr1G024350.10 , HORVU5Hr1G046950.28 , HORVU5Hr1G046950.29 , HORVU5Hr1G046950.26 , HORVU5Hr1G046950.27 , HORVU5Hr1G046950.24 , HORVU5Hr1G046950.25 , HORVU5Hr1G046950.22 , HORVU5Hr1G046950.23 , HORVU5Hr1G046950.20 , HORVU5Hr1G046950.21 , HORVU5Hr1G046950.17 , HORVU5Hr1G046950.16 , HORVU5Hr1G046950.15 , HORVU5Hr1G046950.14 , HORVU5Hr1G046950.13 , HORVU5Hr1G046950.12 , HORVU5Hr1G046950.11 , HORVU5Hr1G046950.10 , HORVU5Hr1G046950.19 , HORVU5Hr1G046950.18 , HORVU7Hr1G024350.19 , HORVU7Hr1G024350.18 , HORVU7Hr1G024350.17 , HORVU7Hr1G024350.16 , HORVU7Hr1G024350.31 , HORVU7Hr1G024350.30 , HORVU7Hr1G024350.33 , HORVU7Hr1G024350.32 , HORVU7Hr1G024350.35
Wheat TraesCS7B02G012700 , TraesCS5A02G148700 , TraesCS5B02G147300 , TraesCS7A02G115900 , TraesCS5D02G144200 , TraesCS5D02G144200 , TraesCS7D02G110700
Populus -


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cDNA sequences
Sobic.003G258200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G112600 integral membrane protein, putative, expressed -
2 Sobic.002G054700 indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K01695: tryptophan synthase alpha chain
3 Sobic.008G022400 EMB2748, putative, expressed -
4 Sobic.008G069300 - -
5 Sobic.001G306800 expressed protein -
6 Sobic.010G277700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
7 Sobic.007G030100 galactosyltransferase family protein, putative, expressed -
8 Sobic.010G153400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
9 Sobic.008G162300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
10 Sobic.003G428000 expressed protein -
11 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
12 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
13 Sobic.004G116400 OsFBK5 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.008G116700 expressed protein -
15 Sobic.004G068100 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
16 Sobic.007G032000 tryptophan synthase beta chain 1, putative, expressed K01696: tryptophan synthase beta chain
17 Sobic.001G052100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
18 Sobic.004G194400 expressed protein -
19 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
20 Sobic.005G123400 expressed protein -


Gene co-expression network
sample Sobic003G258200 Sobic003G258200 Sobic010G112600 Sobic010G112600 Sobic003G258200--Sobic010G112600 Sobic002G054700 Sobic002G054700 Sobic003G258200--Sobic002G054700 Sobic008G022400 Sobic008G022400 Sobic003G258200--Sobic008G022400 Sobic008G069300 Sobic008G069300 Sobic003G258200--Sobic008G069300 Sobic001G306800 Sobic001G306800 Sobic003G258200--Sobic001G306800 Sobic010G277700 Sobic010G277700 Sobic003G258200--Sobic010G277700 Sobic007G030100 Sobic007G030100 Sobic003G258200--Sobic007G030100 Sobic010G153400 Sobic010G153400 Sobic003G258200--Sobic010G153400 Sobic008G162300 Sobic008G162300 Sobic003G258200--Sobic008G162300 Sobic005G123400 Sobic005G123400 Sobic010G112600--Sobic005G123400 Sobic003G117800 Sobic003G117800 Sobic010G112600--Sobic003G117800 Sobic004G194400 Sobic004G194400 Sobic010G112600--Sobic004G194400 Sobic010G112600--Sobic010G277700 Sobic003G190200 Sobic003G190200 Sobic010G112600--Sobic003G190200 Sobic009G252300 Sobic009G252300 Sobic010G112600--Sobic009G252300 Sobic003G394500 Sobic003G394500 Sobic010G112600--Sobic003G394500 Sobic006G237500 Sobic006G237500 Sobic010G112600--Sobic006G237500 Sobic008G155400 Sobic008G155400 Sobic010G112600--Sobic008G155400 Sobic002G397900 Sobic002G397900 Sobic002G054700--Sobic002G397900 Sobic002G259700 Sobic002G259700 Sobic002G054700--Sobic002G259700 Sobic004G116400 Sobic004G116400 Sobic002G054700--Sobic004G116400 Sobic002G255400 Sobic002G255400 Sobic002G054700--Sobic002G255400 Sobic003G089100 Sobic003G089100 Sobic002G054700--Sobic003G089100 Sobic003G201500 Sobic003G201500 Sobic002G054700--Sobic003G201500 Sobic006G041800 Sobic006G041800 Sobic002G054700--Sobic006G041800 Sobic001G188000 Sobic001G188000 Sobic002G054700--Sobic001G188000 Sobic003G260600 Sobic003G260600 Sobic002G054700--Sobic003G260600 Sobic001G280500 Sobic001G280500 Sobic008G022400--Sobic001G280500 Sobic002G414800 Sobic002G414800 Sobic008G022400--Sobic002G414800 Sobic002G213900 Sobic002G213900 Sobic008G022400--Sobic002G213900 Sobic010G086300 Sobic010G086300 Sobic008G022400--Sobic010G086300 Sobic008G022400--Sobic010G153400 Sobic001G384200 Sobic001G384200 Sobic008G022400--Sobic001G384200 Sobic001G387300 Sobic001G387300 Sobic008G022400--Sobic001G387300 Sobic006G265800 Sobic006G265800 Sobic008G022400--Sobic006G265800 Sobic008G166100 Sobic008G166100 Sobic008G022400--Sobic008G166100 Sobic009G046900 Sobic009G046900 Sobic008G069300--Sobic009G046900 Sobic002G074800 Sobic002G074800 Sobic008G069300--Sobic002G074800 Sobic003G428000 Sobic003G428000 Sobic008G069300--Sobic003G428000 Sobic009G148600 Sobic009G148600 Sobic008G069300--Sobic009G148600 Sobic010G109800 Sobic010G109800 Sobic008G069300--Sobic010G109800 Sobic009G229400 Sobic009G229400 Sobic008G069300--Sobic009G229400 Sobic003G198900 Sobic003G198900 Sobic008G069300--Sobic003G198900 Sobic009G156800 Sobic009G156800 Sobic008G069300--Sobic009G156800 Sobic006G270000 Sobic006G270000 Sobic008G069300--Sobic006G270000 Sobic002G348400 Sobic002G348400 Sobic001G306800--Sobic002G348400 Sobic010G069500 Sobic010G069500 Sobic001G306800--Sobic010G069500 Sobic009G072033 Sobic009G072033 Sobic001G306800--Sobic009G072033 Sobic001G305900 Sobic001G305900 Sobic001G306800--Sobic001G305900 Sobic001G306800--Sobic010G153400 Sobic001G306800--Sobic005G123400 Sobic001G306800--Sobic001G188000 Sobic001G306800--Sobic008G022400 Sobic007G218600 Sobic007G218600 Sobic001G306800--Sobic007G218600 Sobic006G071362 Sobic006G071362 Sobic010G277700--Sobic006G071362 Sobic010G277700--Sobic004G194400 Sobic006G134500 Sobic006G134500 Sobic010G277700--Sobic006G134500 Sobic010G134650 Sobic010G134650 Sobic010G277700--Sobic010G134650 Sobic010G277700--Sobic009G046900 Sobic010G277700--Sobic008G022400 Sobic004G189000 Sobic004G189000 Sobic010G277700--Sobic004G189000 Sobic010G130601 Sobic010G130601 Sobic010G277700--Sobic010G130601 Sobic010G277700--Sobic010G112600 Sobic007G030100--Sobic003G190200 Sobic002G147200 Sobic002G147200 Sobic007G030100--Sobic002G147200 Sobic007G030100--Sobic003G394500 Sobic007G030100--Sobic003G117800 Sobic001G385000 Sobic001G385000 Sobic007G030100--Sobic001G385000 Sobic007G172700 Sobic007G172700 Sobic007G030100--Sobic007G172700 Sobic001G424800 Sobic001G424800 Sobic007G030100--Sobic001G424800 Sobic006G232800 Sobic006G232800 Sobic007G030100--Sobic006G232800 Sobic007G030100--Sobic003G428000 Sobic010G153400--Sobic002G348400 Sobic003G004800 Sobic003G004800 Sobic010G153400--Sobic003G004800 Sobic002G392400 Sobic002G392400 Sobic010G153400--Sobic002G392400 Sobic010G153400--Sobic008G022400 Sobic001G131900 Sobic001G131900 Sobic010G153400--Sobic001G131900 Sobic003G293400 Sobic003G293400 Sobic010G153400--Sobic003G293400 Sobic010G153400--Sobic006G265800 Sobic001G117900 Sobic001G117900 Sobic010G153400--Sobic001G117900 Sobic004G328100 Sobic004G328100 Sobic010G153400--Sobic004G328100 Sobic008G162300--Sobic010G153400 Sobic008G162300--Sobic002G348400 Sobic001G440000 Sobic001G440000 Sobic008G162300--Sobic001G440000 Sobic008G162300--Sobic009G229400 Sobic009G066200 Sobic009G066200 Sobic008G162300--Sobic009G066200 Sobic008G162300--Sobic004G116400 Sobic001G539400 Sobic001G539400 Sobic008G162300--Sobic001G539400 Sobic004G038400 Sobic004G038400 Sobic008G162300--Sobic004G038400 Sobic005G174750 Sobic005G174750 Sobic008G162300--Sobic005G174750
Octagon: transcription factors


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