Gene annotation
Transcriptome id Sobic.003G276800.1
Synonym
Functional annotation expressed protein
UniProt A0A1W0VZ86
Pfam PF13041 PF01535 PF14432
Panther DB PTHR24015 PTHR24015:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G40405 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g51790.1 : expressed protein
MaizeGDB (Corn) Zm00025a027784
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G276800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G166650 - -
2 Sobic.002G095800 expressed protein -
3 Sobic.010G067000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.010G250500 DEFL21 - Defensin and Defensin-like DEFL family, expressed -
5 Sobic.005G024600 Rf1, mitochondrial precursor, putative, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
6 Sobic.009G166400 MCM8 - Putative minichromosome maintenance MCM family subunit 8, expressed K10737: DNA helicase MCM8
7 Sobic.003G107000 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.003G058100 kelch repeat-containing protein, putative, expressed -
9 Sobic.004G203800 steroid nuclear receptor, ligand-binding, putative, expressed -
10 Sobic.010G158832 - -
11 Sobic.004G053100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.004G073000 GA20292-PA, putative, expressed -
13 Sobic.009G205400 RING-H2 finger protein ATL2M, putative, expressed -
14 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
15 Sobic.009G042500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.002G306500 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
17 Sobic.008G137100 RALFL42 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
18 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.010G092801 - -
20 Sobic.006G266000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G276800 Sobic003G276800 Sobic009G166650 Sobic009G166650 Sobic003G276800--Sobic009G166650 Sobic002G095800 Sobic002G095800 Sobic003G276800--Sobic002G095800 Sobic010G067000 Sobic010G067000 Sobic003G276800--Sobic010G067000 Sobic010G250500 Sobic010G250500 Sobic003G276800--Sobic010G250500 Sobic005G024600 Sobic005G024600 Sobic003G276800--Sobic005G024600 Sobic009G166400 Sobic009G166400 Sobic003G276800--Sobic009G166400 Sobic003G107000 Sobic003G107000 Sobic003G276800--Sobic003G107000 Sobic003G058100 Sobic003G058100 Sobic003G276800--Sobic003G058100 Sobic004G203800 Sobic004G203800 Sobic003G276800--Sobic004G203800 Sobic009G166650--Sobic009G166400 Sobic009G166650--Sobic002G095800 Sobic002G305900 Sobic002G305900 Sobic009G166650--Sobic002G305900 Sobic001G455300 Sobic001G455300 Sobic009G166650--Sobic001G455300 Sobic002G390700 Sobic002G390700 Sobic009G166650--Sobic002G390700 Sobic001G221601 Sobic001G221601 Sobic009G166650--Sobic001G221601 Sobic007G102600 Sobic007G102600 Sobic009G166650--Sobic007G102600 Sobic001G394000 Sobic001G394000 Sobic009G166650--Sobic001G394000 Sobic004G073800 Sobic004G073800 Sobic009G166650--Sobic004G073800 Sobic003G384100 Sobic003G384100 Sobic002G095800--Sobic003G384100 Sobic002G095800--Sobic009G166650 Sobic002G074500 Sobic002G074500 Sobic002G095800--Sobic002G074500 Sobic002G095800--Sobic002G390700 Sobic007G172900 Sobic007G172900 Sobic002G095800--Sobic007G172900 Sobic006G234500 Sobic006G234500 Sobic002G095800--Sobic006G234500 Sobic002G095200 Sobic002G095200 Sobic002G095800--Sobic002G095200 Sobic010G046200 Sobic010G046200 Sobic002G095800--Sobic010G046200 Sobic001G303300 Sobic001G303300 Sobic002G095800--Sobic001G303300 Sobic001G200600 Sobic001G200600 Sobic010G067000--Sobic001G200600 Sobic003G433600 Sobic003G433600 Sobic010G067000--Sobic003G433600 Sobic008G009300 Sobic008G009300 Sobic010G067000--Sobic008G009300 Sobic007G179500 Sobic007G179500 Sobic010G067000--Sobic007G179500 Sobic004G250100 Sobic004G250100 Sobic010G067000--Sobic004G250100 Sobic009G042500 Sobic009G042500 Sobic010G067000--Sobic009G042500 Sobic002G111700 Sobic002G111700 Sobic010G067000--Sobic002G111700 Sobic003G203100 Sobic003G203100 Sobic010G067000--Sobic003G203100 Sobic009G226000 Sobic009G226000 Sobic010G067000--Sobic009G226000 Sobic010G250500--Sobic010G067000 Sobic010G244400 Sobic010G244400 Sobic010G250500--Sobic010G244400 Sobic010G250500--Sobic003G276800 Sobic009G136200 Sobic009G136200 Sobic010G250500--Sobic009G136200 Sobic001G490800 Sobic001G490800 Sobic010G250500--Sobic001G490800 Sobic004G176500 Sobic004G176500 Sobic010G250500--Sobic004G176500 Sobic010G066900 Sobic010G066900 Sobic010G250500--Sobic010G066900 Sobic003G236100 Sobic003G236100 Sobic010G250500--Sobic003G236100 Sobic005G182300 Sobic005G182300 Sobic010G250500--Sobic005G182300 Sobic009G205000 Sobic009G205000 Sobic005G024600--Sobic009G205000 Sobic003G303000 Sobic003G303000 Sobic005G024600--Sobic003G303000 Sobic008G072050 Sobic008G072050 Sobic005G024600--Sobic008G072050 Sobic005G110550 Sobic005G110550 Sobic005G024600--Sobic005G110550 Sobic007G202000 Sobic007G202000 Sobic005G024600--Sobic007G202000 Sobic004G041000 Sobic004G041000 Sobic005G024600--Sobic004G041000 Sobic003G399900 Sobic003G399900 Sobic005G024600--Sobic003G399900 Sobic010G202900 Sobic010G202900 Sobic005G024600--Sobic010G202900 Sobic005G024600--Sobic007G172900 Sobic009G166400--Sobic009G166650 Sobic009G097500 Sobic009G097500 Sobic009G166400--Sobic009G097500 Sobic009G166400--Sobic002G305900 Sobic004G272950 Sobic004G272950 Sobic009G166400--Sobic004G272950 SobicK031300 SobicK031300 Sobic009G166400--SobicK031300 SobicK043600 SobicK043600 Sobic009G166400--SobicK043600 Sobic009G166400--Sobic001G455300 Sobic003G168600 Sobic003G168600 Sobic009G166400--Sobic003G168600 Sobic009G209650 Sobic009G209650 Sobic009G166400--Sobic009G209650 Sobic009G118500 Sobic009G118500 Sobic003G107000--Sobic009G118500 Sobic003G107000--Sobic001G221601 Sobic002G306500 Sobic002G306500 Sobic003G107000--Sobic002G306500 Sobic004G053100 Sobic004G053100 Sobic003G107000--Sobic004G053100 Sobic005G030600 Sobic005G030600 Sobic003G107000--Sobic005G030600 Sobic010G213000 Sobic010G213000 Sobic003G107000--Sobic010G213000 Sobic006G276900 Sobic006G276900 Sobic003G107000--Sobic006G276900 Sobic007G067900 Sobic007G067900 Sobic003G107000--Sobic007G067900 Sobic002G403700 Sobic002G403700 Sobic003G107000--Sobic002G403700 Sobic005G108225 Sobic005G108225 Sobic003G058100--Sobic005G108225 Sobic005G127900 Sobic005G127900 Sobic003G058100--Sobic005G127900 Sobic009G186001 Sobic009G186001 Sobic003G058100--Sobic009G186001 Sobic008G176900 Sobic008G176900 Sobic003G058100--Sobic008G176900 Sobic008G126500 Sobic008G126500 Sobic003G058100--Sobic008G126500 Sobic009G070250 Sobic009G070250 Sobic003G058100--Sobic009G070250 Sobic001G510300 Sobic001G510300 Sobic003G058100--Sobic001G510300 Sobic008G120132 Sobic008G120132 Sobic003G058100--Sobic008G120132 Sobic001G273000 Sobic001G273000 Sobic003G058100--Sobic001G273000 Sobic010G254700 Sobic010G254700 Sobic004G203800--Sobic010G254700 Sobic004G203800--Sobic003G107000 Sobic004G203800--Sobic010G213000 Sobic001G088400 Sobic001G088400 Sobic004G203800--Sobic001G088400 Sobic002G198801 Sobic002G198801 Sobic004G203800--Sobic002G198801 Sobic001G026400 Sobic001G026400 Sobic004G203800--Sobic001G026400 Sobic001G292500 Sobic001G292500 Sobic004G203800--Sobic001G292500 Sobic004G203800--Sobic002G306500 Sobic003G043900 Sobic003G043900 Sobic004G203800--Sobic003G043900
Octagon: transcription factors


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