Gene annotation
Transcriptome id Sobic.003G303900.4,Sobic.003G303900.1,Sobic.003G303900.3,Sobic.003G303900.2
Synonym Sb03g035250
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
AMP-binding enzyme, putative, expressed
UniProt A0A1W0VZQ2 , A0A1B6Q680 , A0A1W0VZP8 , A0A1B6Q695
Pfam PF13193 PF00501
Panther DB PTHR24095 PTHR24095:SF52
NCBI CDD KOG1176; Acyl-CoA synthetase
KEGG Orthology K18660; malonyl-CoA/methylmalonyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT3G16170 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os01g55590.1 : AMP-binding enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a027464
Brachypodium KQK09860 , KQK09859 , KQK09858 , KQK09801
Barley HORVU3Hr1G073560.12 , HORVU3Hr1G073560.13 , HORVU3Hr1G073560.10 , HORVU3Hr1G073560.11 , HORVU3Hr1G073560.14 , HORVU3Hr1G073560.15 , HORVU3Hr1G073560.1 , HORVU3Hr1G073560.2 , HORVU3Hr1G073560.3 , HORVU3Hr1G073560.4 , HORVU3Hr1G073560.5 , HORVU3Hr1G073560.6 , HORVU3Hr1G073560.7 , HORVU3Hr1G073560.8 , HORVU3Hr1G073560.9
Wheat TraesCS3B02G331900 , TraesCS3B02G331900 , TraesCS3B02G331900 , TraesCS3A02G304600 , TraesCS3A02G304600 , TraesCS3D02G297300 , TraesCS3D02G297300 , TraesCS3A02G304600 , TraesCS3B02G331900
Populus -


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cDNA sequences
Sobic.003G303900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G170700 Trihelix Family(PubMedID : 24864043)@homeodomain, putative, expressed -
2 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
3 Sobic.001G007100 expressed protein -
4 Sobic.004G209800 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
5 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
6 Sobic.006G215700 OsFBX172 - F-box domain containing protein, expressed -
7 Sobic.003G012300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15109: SLC25A20_29, CACT, CACL, solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29
8 Sobic.010G077100 CDP-alcohol phosphatidyltransferase, putative, expressed K00993: ethanolaminephosphotransferase
9 Sobic.001G113500 zinc finger, C3HC4 type family protein, expressed -
10 Sobic.001G501000 transcription factor Dp, putative, expressed K04683: transcription factor Dp-1
11 Sobic.003G442601 - K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
12 Sobic.007G060700 phosphopantothenate--cysteine ligase, putative, expressed K01922: PPCS, phosphopantothenate---cysteine ligase (ATP)
13 Sobic.001G382600 expressed protein -
14 Sobic.001G446850 - -
15 Sobic.001G522100 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
16 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
17 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
18 Sobic.001G440600 expressed protein -
19 Sobic.003G089000 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
20 Sobic.002G262300 lecithine cholesterol acyltransferase, putative, expressed -


Gene co-expression network
sample Sobic003G303900 Sobic003G303900 Sobic004G170700 Sobic004G170700 Sobic003G303900--Sobic004G170700 Sobic006G114400 Sobic006G114400 Sobic003G303900--Sobic006G114400 Sobic001G007100 Sobic001G007100 Sobic003G303900--Sobic001G007100 Sobic004G209800 Sobic004G209800 Sobic003G303900--Sobic004G209800 Sobic010G072800 Sobic010G072800 Sobic003G303900--Sobic010G072800 Sobic006G215700 Sobic006G215700 Sobic003G303900--Sobic006G215700 Sobic003G012300 Sobic003G012300 Sobic003G303900--Sobic003G012300 Sobic010G077100 Sobic010G077100 Sobic003G303900--Sobic010G077100 Sobic001G113500 Sobic001G113500 Sobic003G303900--Sobic001G113500 Sobic002G385900 Sobic002G385900 Sobic004G170700--Sobic002G385900 Sobic004G170700--Sobic006G114400 Sobic003G257000 Sobic003G257000 Sobic004G170700--Sobic003G257000 Sobic010G064600 Sobic010G064600 Sobic004G170700--Sobic010G064600 Sobic006G192700 Sobic006G192700 Sobic004G170700--Sobic006G192700 Sobic004G222800 Sobic004G222800 Sobic004G170700--Sobic004G222800 Sobic004G271700 Sobic004G271700 Sobic004G170700--Sobic004G271700 Sobic006G217700 Sobic006G217700 Sobic004G170700--Sobic006G217700 Sobic001G085900 Sobic001G085900 Sobic004G170700--Sobic001G085900 Sobic009G139800 Sobic009G139800 Sobic006G114400--Sobic009G139800 Sobic003G009300 Sobic003G009300 Sobic006G114400--Sobic003G009300 Sobic003G087000 Sobic003G087000 Sobic006G114400--Sobic003G087000 Sobic002G113800 Sobic002G113800 Sobic006G114400--Sobic002G113800 Sobic004G335000 Sobic004G335000 Sobic006G114400--Sobic004G335000 Sobic002G141700 Sobic002G141700 Sobic006G114400--Sobic002G141700 Sobic007G142500 Sobic007G142500 Sobic006G114400--Sobic007G142500 Sobic004G194900 Sobic004G194900 Sobic006G114400--Sobic004G194900 Sobic009G225000 Sobic009G225000 Sobic006G114400--Sobic009G225000 Sobic001G375600 Sobic001G375600 Sobic001G007100--Sobic001G375600 Sobic009G027300 Sobic009G027300 Sobic001G007100--Sobic009G027300 Sobic002G045600 Sobic002G045600 Sobic001G007100--Sobic002G045600 Sobic007G075400 Sobic007G075400 Sobic001G007100--Sobic007G075400 Sobic001G313700 Sobic001G313700 Sobic001G007100--Sobic001G313700 Sobic001G007100--Sobic010G072800 Sobic010G139600 Sobic010G139600 Sobic001G007100--Sobic010G139600 Sobic004G065000 Sobic004G065000 Sobic001G007100--Sobic004G065000 Sobic001G207400 Sobic001G207400 Sobic001G007100--Sobic001G207400 Sobic004G016000 Sobic004G016000 Sobic004G209800--Sobic004G016000 Sobic004G178300 Sobic004G178300 Sobic004G209800--Sobic004G178300 Sobic004G209800--Sobic010G072800 Sobic001G137000 Sobic001G137000 Sobic004G209800--Sobic001G137000 Sobic002G156000 Sobic002G156000 Sobic004G209800--Sobic002G156000 Sobic004G209800--Sobic001G007100 Sobic004G223300 Sobic004G223300 Sobic004G209800--Sobic004G223300 Sobic001G413900 Sobic001G413900 Sobic004G209800--Sobic001G413900 Sobic004G209800--Sobic001G375600 Sobic010G072800--Sobic001G375600 Sobic006G271200 Sobic006G271200 Sobic010G072800--Sobic006G271200 Sobic002G430000 Sobic002G430000 Sobic010G072800--Sobic002G430000 Sobic010G072800--Sobic001G207400 Sobic010G072800--Sobic004G209800 Sobic003G089000 Sobic003G089000 Sobic010G072800--Sobic003G089000 Sobic007G060201 Sobic007G060201 Sobic010G072800--Sobic007G060201 Sobic006G204900 Sobic006G204900 Sobic010G072800--Sobic006G204900 Sobic004G269200 Sobic004G269200 Sobic010G072800--Sobic004G269200 Sobic010G229400 Sobic010G229400 Sobic006G215700--Sobic010G229400 Sobic003G139800 Sobic003G139800 Sobic006G215700--Sobic003G139800 Sobic001G107600 Sobic001G107600 Sobic006G215700--Sobic001G107600 Sobic001G301700 Sobic001G301700 Sobic006G215700--Sobic001G301700 Sobic010G278200 Sobic010G278200 Sobic006G215700--Sobic010G278200 Sobic006G104600 Sobic006G104600 Sobic006G215700--Sobic006G104600 Sobic003G365300 Sobic003G365300 Sobic006G215700--Sobic003G365300 Sobic004G177300 Sobic004G177300 Sobic006G215700--Sobic004G177300 Sobic010G164000 Sobic010G164000 Sobic006G215700--Sobic010G164000 Sobic001G395700 Sobic001G395700 Sobic003G012300--Sobic001G395700 Sobic005G231900 Sobic005G231900 Sobic003G012300--Sobic005G231900 Sobic002G274800 Sobic002G274800 Sobic003G012300--Sobic002G274800 Sobic003G214400 Sobic003G214400 Sobic003G012300--Sobic003G214400 Sobic002G420700 Sobic002G420700 Sobic003G012300--Sobic002G420700 Sobic009G153000 Sobic009G153000 Sobic003G012300--Sobic009G153000 Sobic002G058500 Sobic002G058500 Sobic003G012300--Sobic002G058500 Sobic004G162400 Sobic004G162400 Sobic003G012300--Sobic004G162400 Sobic007G186200 Sobic007G186200 Sobic003G012300--Sobic007G186200 Sobic002G383600 Sobic002G383600 Sobic010G077100--Sobic002G383600 Sobic001G522100 Sobic001G522100 Sobic010G077100--Sobic001G522100 Sobic008G110300 Sobic008G110300 Sobic010G077100--Sobic008G110300 Sobic001G292000 Sobic001G292000 Sobic010G077100--Sobic001G292000 Sobic004G255700 Sobic004G255700 Sobic010G077100--Sobic004G255700 Sobic007G146400 Sobic007G146400 Sobic010G077100--Sobic007G146400 Sobic004G189200 Sobic004G189200 Sobic010G077100--Sobic004G189200 Sobic008G047400 Sobic008G047400 Sobic010G077100--Sobic008G047400 Sobic001G111800 Sobic001G111800 Sobic010G077100--Sobic001G111800 Sobic001G113500--Sobic003G139800 Sobic001G113500--Sobic010G278200 Sobic004G202500 Sobic004G202500 Sobic001G113500--Sobic004G202500 Sobic009G222500 Sobic009G222500 Sobic001G113500--Sobic009G222500 Sobic010G147100 Sobic010G147100 Sobic001G113500--Sobic010G147100 Sobic004G066200 Sobic004G066200 Sobic001G113500--Sobic004G066200 Sobic003G099100 Sobic003G099100 Sobic001G113500--Sobic003G099100 Sobic010G131900 Sobic010G131900 Sobic001G113500--Sobic010G131900 Sobic001G113500--Sobic002G045600
Octagon: transcription factors


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