Gene annotation
Transcriptome id Sobic.004G170700.1
Synonym SbTri11, Sb04g022190
Functional annotation Trihelix Family (PubMedID : 24864043)
homeodomain, putative, expressed
UniProt C5XU42
Pfam PF13837
Panther DB PTHR21654 PTHR21654:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21200 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os02g33770.1 : homeodomain, putative, expressed
MaizeGDB (Corn) Zm00025a020600 , Zm00025a031559 , Zm00025a036145 , Zm00025a024357
Brachypodium KQK04156 , PNT66844 , PNT70443
Barley -
Wheat TraesCS3D02G118300
Populus -


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cDNA sequences
Sobic.004G170700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
2 Sobic.006G114400 OsGrx_S15.2 - glutaredoxin subgroup II, expressed K07390: grxD, monothiol glutaredoxin
3 Sobic.003G257000 THAP domain-containing protein 4, putative, expressed -
4 Sobic.010G064600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@LIM domain-containing protein, putative, expressed -
5 Sobic.006G192700 expressed protein -
6 Sobic.004G222800 expressed protein -
7 Sobic.004G271700 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
8 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
9 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
10 Sobic.008G115500 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
11 Sobic.010G229400 polyprenyl synthetase, putative, expressed K14066: geranyl diphosphate synthase
12 Sobic.003G087000 expressed protein -
13 Sobic.004G167400 expressed protein -
14 Sobic.001G415000 expressed protein -
15 Sobic.001G440600 expressed protein -
16 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
17 Sobic.006G215700 OsFBX172 - F-box domain containing protein, expressed -
18 Sobic.001G103200 DNA binding protein, putative, expressed -
19 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
20 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G170700 Sobic004G170700 Sobic002G385900 Sobic002G385900 Sobic004G170700--Sobic002G385900 Sobic006G114400 Sobic006G114400 Sobic004G170700--Sobic006G114400 Sobic003G257000 Sobic003G257000 Sobic004G170700--Sobic003G257000 Sobic010G064600 Sobic010G064600 Sobic004G170700--Sobic010G064600 Sobic006G192700 Sobic006G192700 Sobic004G170700--Sobic006G192700 Sobic004G222800 Sobic004G222800 Sobic004G170700--Sobic004G222800 Sobic004G271700 Sobic004G271700 Sobic004G170700--Sobic004G271700 Sobic006G217700 Sobic006G217700 Sobic004G170700--Sobic006G217700 Sobic001G085900 Sobic001G085900 Sobic004G170700--Sobic001G085900 Sobic009G135600 Sobic009G135600 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic009G139800 Sobic009G139800 Sobic006G114400--Sobic009G139800 Sobic003G009300 Sobic003G009300 Sobic006G114400--Sobic003G009300 Sobic003G087000 Sobic003G087000 Sobic006G114400--Sobic003G087000 Sobic002G113800 Sobic002G113800 Sobic006G114400--Sobic002G113800 Sobic004G335000 Sobic004G335000 Sobic006G114400--Sobic004G335000 Sobic002G141700 Sobic002G141700 Sobic006G114400--Sobic002G141700 Sobic007G142500 Sobic007G142500 Sobic006G114400--Sobic007G142500 Sobic004G194900 Sobic004G194900 Sobic006G114400--Sobic004G194900 Sobic009G225000 Sobic009G225000 Sobic006G114400--Sobic009G225000 Sobic004G167400 Sobic004G167400 Sobic003G257000--Sobic004G167400 Sobic003G257000--Sobic002G385900 Sobic001G199100 Sobic001G199100 Sobic003G257000--Sobic001G199100 Sobic003G257000--Sobic006G192700 Sobic002G352700 Sobic002G352700 Sobic003G257000--Sobic002G352700 Sobic004G119200 Sobic004G119200 Sobic003G257000--Sobic004G119200 Sobic010G229400 Sobic010G229400 Sobic003G257000--Sobic010G229400 Sobic003G257000--Sobic002G166900 Sobic008G093000 Sobic008G093000 Sobic003G257000--Sobic008G093000 Sobic010G064600--Sobic003G087000 Sobic010G064600--Sobic008G093000 Sobic010G261600 Sobic010G261600 Sobic010G064600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic010G064600--Sobic004G228800 Sobic010G184300 Sobic010G184300 Sobic010G064600--Sobic010G184300 Sobic010G064600--Sobic006G281800 Sobic009G072700 Sobic009G072700 Sobic010G064600--Sobic009G072700 Sobic001G089800 Sobic001G089800 Sobic010G064600--Sobic001G089800 Sobic001G003000 Sobic001G003000 Sobic010G064600--Sobic001G003000 Sobic006G192700--Sobic001G057800 Sobic006G192700--Sobic010G064600 Sobic006G192700--Sobic008G093000 Sobic004G006200 Sobic004G006200 Sobic006G192700--Sobic004G006200 Sobic006G192700--Sobic001G003000 Sobic006G192700--Sobic009G207000 Sobic003G009100 Sobic003G009100 Sobic006G192700--Sobic003G009100 Sobic005G139400 Sobic005G139400 Sobic006G192700--Sobic005G139400 Sobic002G244100 Sobic002G244100 Sobic006G192700--Sobic002G244100 Sobic002G294200 Sobic002G294200 Sobic004G222800--Sobic002G294200 Sobic004G132300 Sobic004G132300 Sobic004G222800--Sobic004G132300 Sobic004G274400 Sobic004G274400 Sobic004G222800--Sobic004G274400 Sobic006G064800 Sobic006G064800 Sobic004G222800--Sobic006G064800 Sobic001G049200 Sobic001G049200 Sobic004G222800--Sobic001G049200 Sobic002G242500 Sobic002G242500 Sobic004G222800--Sobic002G242500 Sobic010G161450 Sobic010G161450 Sobic004G222800--Sobic010G161450 Sobic004G222800--Sobic010G064600 Sobic003G167500 Sobic003G167500 Sobic004G222800--Sobic003G167500 Sobic008G115500 Sobic008G115500 Sobic004G271700--Sobic008G115500 Sobic001G516100 Sobic001G516100 Sobic004G271700--Sobic001G516100 Sobic003G002400 Sobic003G002400 Sobic004G271700--Sobic003G002400 Sobic009G219900 Sobic009G219900 Sobic004G271700--Sobic009G219900 Sobic001G158500 Sobic001G158500 Sobic004G271700--Sobic001G158500 Sobic001G103200 Sobic001G103200 Sobic004G271700--Sobic001G103200 Sobic010G188100 Sobic010G188100 Sobic004G271700--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic004G271700--Sobic001G220400 Sobic002G293300 Sobic002G293300 Sobic004G271700--Sobic002G293300 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic006G217700--Sobic004G132300 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G085900--Sobic001G158500 Sobic002G083266 Sobic002G083266 Sobic001G085900--Sobic002G083266 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic007G006700 Sobic007G006700 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900
Octagon: transcription factors


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