Gene annotation
Transcriptome id Sobic.003G442601.1
Synonym -
Functional annotation -
UniProt A0A1W0W1J4
Pfam PF02268 PF02751
Panther DB PTHR10966
NCBI CDD KOG3463; Transcription initiation factor IIA, gamma subunit
KEGG Orthology K03123; TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
Gene Ontology GO:0006367; transcription initiation from RNA polymerase II promoter GO:0005672transcription factor TFIIA complex


Orthologs (automatic annotation)
TAIR AT4G24440 : transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)
RAP-DB (Rice) LOC_Os01g73890.1 : transcription initiation factor IIA gamma chain, putative, expressed
MaizeGDB (Corn) Zm00025a025839
Brachypodium KQK08070
Barley HORVU1Hr1G003460.1 , HORVU1Hr1G003460.2
Wheat TraesCS1A02G024500 , TraesCS1D02G024600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G080400 hydroquinone glucosyltransferase, putative, expressed K08237: hydroquinone glucosyltransferase
2 Sobic.010G272800 OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed K03798: ftsH, cell division protease FtsH
3 Sobic.010G020800 aminotransferase, classes I and II, domain containing protein, expressed K14270: aminotransferase
4 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.005G149700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.003G227501 - -
7 Sobic.007G210500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.001G282600 transporter family protein, putative, expressed -
9 Sobic.003G348000 SAC3/GANP family protein, putative, expressed -
10 Sobic.003G301500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K17623: PUDP, pseudouridine 5'-phosphatase
11 Sobic.004G225200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein nitrilase 4 NIT4 (Os)(PubMedID : 27208977)@nitrilase, putative, expressed K13035: beta-cyano-L-alanine hydratase/nitrilase
12 Sobic.004G261900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@diacylglycerol O-acyltransferase, putative, expressed K14457: MOGAT2, 2-acylglycerol O-acyltransferase 2
13 Sobic.002G262300 lecithine cholesterol acyltransferase, putative, expressed -
14 Sobic.004G179300 chloride channel protein, putative, expressed K05016: chloride channel 7
15 Sobic.006G275100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
16 Sobic.001G062300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
17 Sobic.004G211866 - -
18 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.005G024800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@major facilitator superfamily antiporter, putative, expressed -
20 Sobic.010G145500 expressed protein -


Gene co-expression network
sample Sobic003G442601 Sobic003G442601 Sobic009G080400 Sobic009G080400 Sobic003G442601--Sobic009G080400 Sobic010G272800 Sobic010G272800 Sobic003G442601--Sobic010G272800 Sobic010G020800 Sobic010G020800 Sobic003G442601--Sobic010G020800 Sobic006G104600 Sobic006G104600 Sobic003G442601--Sobic006G104600 Sobic005G149700 Sobic005G149700 Sobic003G442601--Sobic005G149700 Sobic003G227501 Sobic003G227501 Sobic003G442601--Sobic003G227501 Sobic007G210500 Sobic007G210500 Sobic003G442601--Sobic007G210500 Sobic001G282600 Sobic001G282600 Sobic003G442601--Sobic001G282600 Sobic003G348000 Sobic003G348000 Sobic003G442601--Sobic003G348000 Sobic002G262300 Sobic002G262300 Sobic009G080400--Sobic002G262300 Sobic009G080400--Sobic007G210500 Sobic001G062300 Sobic001G062300 Sobic009G080400--Sobic001G062300 Sobic009G080400--Sobic010G272800 Sobic004G329300 Sobic004G329300 Sobic009G080400--Sobic004G329300 Sobic009G080400--Sobic001G282600 Sobic009G080400--Sobic006G104600 Sobic004G211866 Sobic004G211866 Sobic009G080400--Sobic004G211866 Sobic009G080400--Sobic003G442601 Sobic010G223200 Sobic010G223200 Sobic010G272800--Sobic010G223200 Sobic003G301500 Sobic003G301500 Sobic010G272800--Sobic003G301500 Sobic002G129400 Sobic002G129400 Sobic010G272800--Sobic002G129400 Sobic010G043100 Sobic010G043100 Sobic010G272800--Sobic010G043100 Sobic010G272800--Sobic001G062300 Sobic001G223550 Sobic001G223550 Sobic010G272800--Sobic001G223550 Sobic009G241200 Sobic009G241200 Sobic010G272800--Sobic009G241200 Sobic009G011600 Sobic009G011600 Sobic010G272800--Sobic009G011600 Sobic010G272800--Sobic010G020800 Sobic003G190400 Sobic003G190400 Sobic010G020800--Sobic003G190400 Sobic001G517800 Sobic001G517800 Sobic010G020800--Sobic001G517800 Sobic004G001500 Sobic004G001500 Sobic010G020800--Sobic004G001500 Sobic007G190000 Sobic007G190000 Sobic010G020800--Sobic007G190000 Sobic002G146300 Sobic002G146300 Sobic010G020800--Sobic002G146300 Sobic003G301900 Sobic003G301900 Sobic010G020800--Sobic003G301900 Sobic010G020800--Sobic009G011600 Sobic001G446850 Sobic001G446850 Sobic010G020800--Sobic001G446850 Sobic006G240400 Sobic006G240400 Sobic010G020800--Sobic006G240400 Sobic006G104600--Sobic001G282600 Sobic002G266000 Sobic002G266000 Sobic006G104600--Sobic002G266000 Sobic003G320700 Sobic003G320700 Sobic006G104600--Sobic003G320700 Sobic001G305500 Sobic001G305500 Sobic006G104600--Sobic001G305500 Sobic002G128200 Sobic002G128200 Sobic006G104600--Sobic002G128200 Sobic003G322700 Sobic003G322700 Sobic006G104600--Sobic003G322700 Sobic006G199000 Sobic006G199000 Sobic006G104600--Sobic006G199000 Sobic006G104600--Sobic005G149700 Sobic004G225200 Sobic004G225200 Sobic006G104600--Sobic004G225200 Sobic004G034600 Sobic004G034600 Sobic005G149700--Sobic004G034600 Sobic001G504900 Sobic001G504900 Sobic005G149700--Sobic001G504900 Sobic005G149700--Sobic002G266000 Sobic005G149700--Sobic002G128200 Sobic005G149700--Sobic006G104600 Sobic005G149700--Sobic009G011600 Sobic009G207600 Sobic009G207600 Sobic005G149700--Sobic009G207600 Sobic003G174301 Sobic003G174301 Sobic005G149700--Sobic003G174301 Sobic003G398100 Sobic003G398100 Sobic005G149700--Sobic003G398100 Sobic004G154532 Sobic004G154532 Sobic003G227501--Sobic004G154532 Sobic006G036700 Sobic006G036700 Sobic003G227501--Sobic006G036700 Sobic004G154466 Sobic004G154466 Sobic003G227501--Sobic004G154466 Sobic003G227501--Sobic003G348000 Sobic006G035400 Sobic006G035400 Sobic003G227501--Sobic006G035400 Sobic002G171101 Sobic002G171101 Sobic003G227501--Sobic002G171101 Sobic004G102750 Sobic004G102750 Sobic003G227501--Sobic004G102750 Sobic010G145500 Sobic010G145500 Sobic003G227501--Sobic010G145500 Sobic005G205200 Sobic005G205200 Sobic003G227501--Sobic005G205200 Sobic007G210500--Sobic001G282600 Sobic007G210500--Sobic002G262300 Sobic007G210500--Sobic009G080400 Sobic010G169000 Sobic010G169000 Sobic007G210500--Sobic010G169000 Sobic007G210500--Sobic001G305500 Sobic003G051600 Sobic003G051600 Sobic007G210500--Sobic003G051600 Sobic007G210500--Sobic006G104600 Sobic001G217400 Sobic001G217400 Sobic007G210500--Sobic001G217400 Sobic007G210500--Sobic004G225200 Sobic001G282600--Sobic002G266000 Sobic001G282600--Sobic006G104600 Sobic001G282600--Sobic006G199000 Sobic001G282600--Sobic004G225200 Sobic001G282600--Sobic007G210500 Sobic001G282600--Sobic004G329300 Sobic008G153400 Sobic008G153400 Sobic001G282600--Sobic008G153400 Sobic003G355600 Sobic003G355600 Sobic001G282600--Sobic003G355600 Sobic001G282600--Sobic003G322700 Sobic003G348000--Sobic003G227501 Sobic003G348000--Sobic004G154532 Sobic004G276900 Sobic004G276900 Sobic003G348000--Sobic004G276900 Sobic004G239700 Sobic004G239700 Sobic003G348000--Sobic004G239700 Sobic003G348000--Sobic005G205200 Sobic008G167600 Sobic008G167600 Sobic003G348000--Sobic008G167600 Sobic001G052600 Sobic001G052600 Sobic003G348000--Sobic001G052600 Sobic002G213300 Sobic002G213300 Sobic003G348000--Sobic002G213300 Sobic002G043800 Sobic002G043800 Sobic003G348000--Sobic002G043800
Octagon: transcription factors


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