Gene annotation
Transcriptome id Sobic.003G308400.1
Synonym Sb03g035690
Functional annotation expressed protein
UniProt C5XKY3 , A0A097PPT0
Pfam -
Panther DB PTHR34454 PTHR34454:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64510 : -
RAP-DB (Rice) LOC_Os01g56180.1 : expressed protein
MaizeGDB (Corn) Zm00025a039937
Brachypodium KQK09932
Barley HORVU6Hr1G087980.4 , HORVU3Hr1G074680.1 , HORVU3Hr1G074680.3 , HORVU3Hr1G074680.4 , HORVU3Hr1G074680.6 , HORVU6Hr1G087980.1 , HORVU6Hr1G087980.6 , HORVU6Hr1G087980.7 , HORVU4Hr1G012210.1 , HORVU4Hr1G012210.2 , HORVU1Hr1G014910.1 , HORVU3Hr1G074680.2
Wheat TraesCS3A02G299000 , TraesCS3D02G302700 , TraesCS3B02G337500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G308400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G032600 cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed K02265: cytochrome c oxidase subunit 5b
2 Sobic.008G129000 phosphatidic acid phosphatase-related, putative, expressed -
3 Sobic.003G141700 50S ribosomal protein L15, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
4 Sobic.001G308700 ATG1, putative, expressed -
5 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
6 Sobic.006G230400 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
7 Sobic.001G391200 ABC transporter, ATP-binding protein, putative, expressed K12608: CCR4-NOT complex subunit CAF16
8 Sobic.007G195701 - -
9 Sobic.001G038000 histidine acid phosphatase, putative, expressed K03103: multiple inositol-polyphosphate phosphatase / 2,3-bisphosphoglycerate 3-phosphatase
10 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
11 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
12 Sobic.006G058900 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
13 Sobic.001G511300 expressed protein -
14 Sobic.001G112400 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed K02258: COX11, cytochrome c oxidase assembly protein subunit 11
15 Sobic.001G214200 lysM domain containing protein, putative, expressed -
16 Sobic.002G262200 expressed protein -
17 Sobic.002G309500 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
18 Sobic.004G159000 cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed K00411: UQCRFS1, RIP1, ubiquinol-cytochrome c reductase iron-sulfur subunit
19 Sobic.007G171500 cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed K00413: CYC1, CYT1, ubiquinol-cytochrome c reductase cytochrome c1 subunit
20 Sobic.001G533300 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23


Gene co-expression network
sample Sobic003G308400 Sobic003G308400 Sobic010G032600 Sobic010G032600 Sobic003G308400--Sobic010G032600 Sobic008G129000 Sobic008G129000 Sobic003G308400--Sobic008G129000 Sobic003G141700 Sobic003G141700 Sobic003G308400--Sobic003G141700 Sobic001G308700 Sobic001G308700 Sobic003G308400--Sobic001G308700 Sobic001G122500 Sobic001G122500 Sobic003G308400--Sobic001G122500 Sobic006G230400 Sobic006G230400 Sobic003G308400--Sobic006G230400 Sobic001G391200 Sobic001G391200 Sobic003G308400--Sobic001G391200 Sobic007G195701 Sobic007G195701 Sobic003G308400--Sobic007G195701 Sobic001G038000 Sobic001G038000 Sobic003G308400--Sobic001G038000 Sobic007G023400 Sobic007G023400 Sobic010G032600--Sobic007G023400 Sobic002G395000 Sobic002G395000 Sobic010G032600--Sobic002G395000 Sobic007G171500 Sobic007G171500 Sobic010G032600--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic010G032600--Sobic004G297700 Sobic001G457000 Sobic001G457000 Sobic010G032600--Sobic001G457000 Sobic002G262200 Sobic002G262200 Sobic010G032600--Sobic002G262200 Sobic001G073600 Sobic001G073600 Sobic010G032600--Sobic001G073600 Sobic009G191400 Sobic009G191400 Sobic010G032600--Sobic009G191400 Sobic009G224400 Sobic009G224400 Sobic010G032600--Sobic009G224400 Sobic008G129000--Sobic001G308700 Sobic001G284400 Sobic001G284400 Sobic008G129000--Sobic001G284400 Sobic001G513300 Sobic001G513300 Sobic008G129000--Sobic001G513300 Sobic004G278000 Sobic004G278000 Sobic008G129000--Sobic004G278000 Sobic002G183400 Sobic002G183400 Sobic008G129000--Sobic002G183400 Sobic008G129000--Sobic006G230400 Sobic004G268200 Sobic004G268200 Sobic008G129000--Sobic004G268200 Sobic004G228700 Sobic004G228700 Sobic008G129000--Sobic004G228700 Sobic003G273000 Sobic003G273000 Sobic008G129000--Sobic003G273000 Sobic001G224400 Sobic001G224400 Sobic003G141700--Sobic001G224400 Sobic001G350600 Sobic001G350600 Sobic003G141700--Sobic001G350600 Sobic004G170400 Sobic004G170400 Sobic003G141700--Sobic004G170400 Sobic004G339300 Sobic004G339300 Sobic003G141700--Sobic004G339300 Sobic001G074700 Sobic001G074700 Sobic003G141700--Sobic001G074700 Sobic009G119900 Sobic009G119900 Sobic003G141700--Sobic009G119900 Sobic003G185500 Sobic003G185500 Sobic003G141700--Sobic003G185500 Sobic001G342200 Sobic001G342200 Sobic003G141700--Sobic001G342200 Sobic007G114200 Sobic007G114200 Sobic003G141700--Sobic007G114200 Sobic001G533300 Sobic001G533300 Sobic001G308700--Sobic001G533300 Sobic001G308700--Sobic001G513300 Sobic001G308700--Sobic008G129000 Sobic009G217000 Sobic009G217000 Sobic001G308700--Sobic009G217000 Sobic010G262300 Sobic010G262300 Sobic001G308700--Sobic010G262300 Sobic002G362000 Sobic002G362000 Sobic001G308700--Sobic002G362000 Sobic001G067601 Sobic001G067601 Sobic001G308700--Sobic001G067601 Sobic001G308700--Sobic001G224400 Sobic003G209000 Sobic003G209000 Sobic001G308700--Sobic003G209000 Sobic006G217300 Sobic006G217300 Sobic001G122500--Sobic006G217300 Sobic001G214200 Sobic001G214200 Sobic001G122500--Sobic001G214200 Sobic004G350300 Sobic004G350300 Sobic001G122500--Sobic004G350300 Sobic006G263100 Sobic006G263100 Sobic001G122500--Sobic006G263100 Sobic010G188100 Sobic010G188100 Sobic001G122500--Sobic010G188100 Sobic003G002400 Sobic003G002400 Sobic001G122500--Sobic003G002400 Sobic010G026700 Sobic010G026700 Sobic001G122500--Sobic010G026700 Sobic001G409900 Sobic001G409900 Sobic001G122500--Sobic001G409900 Sobic002G214900 Sobic002G214900 Sobic001G122500--Sobic002G214900 Sobic003G380300 Sobic003G380300 Sobic006G230400--Sobic003G380300 Sobic006G188400 Sobic006G188400 Sobic006G230400--Sobic006G188400 Sobic001G408400 Sobic001G408400 Sobic006G230400--Sobic001G408400 Sobic003G335300 Sobic003G335300 Sobic006G230400--Sobic003G335300 Sobic001G482800 Sobic001G482800 Sobic006G230400--Sobic001G482800 Sobic007G138100 Sobic007G138100 Sobic006G230400--Sobic007G138100 Sobic006G230400--Sobic008G129000 Sobic001G365700 Sobic001G365700 Sobic006G230400--Sobic001G365700 Sobic005G044300 Sobic005G044300 Sobic006G230400--Sobic005G044300 Sobic001G391200--Sobic007G171500 Sobic001G391200--Sobic004G297700 Sobic001G391200--Sobic003G380300 Sobic004G256700 Sobic004G256700 Sobic001G391200--Sobic004G256700 Sobic001G391200--Sobic010G032600 Sobic001G387200 Sobic001G387200 Sobic001G391200--Sobic001G387200 Sobic001G518500 Sobic001G518500 Sobic001G391200--Sobic001G518500 Sobic003G129900 Sobic003G129900 Sobic001G391200--Sobic003G129900 Sobic001G391200--Sobic003G308400 Sobic002G078400 Sobic002G078400 Sobic007G195701--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic007G195701--Sobic006G182100 Sobic001G283500 Sobic001G283500 Sobic007G195701--Sobic001G283500 Sobic007G195701--Sobic002G214900 Sobic006G010600 Sobic006G010600 Sobic007G195701--Sobic006G010600 Sobic001G309500 Sobic001G309500 Sobic007G195701--Sobic001G309500 Sobic001G445800 Sobic001G445800 Sobic007G195701--Sobic001G445800 Sobic003G220600 Sobic003G220600 Sobic007G195701--Sobic003G220600 Sobic002G333600 Sobic002G333600 Sobic007G195701--Sobic002G333600 Sobic001G038000--Sobic001G350600 Sobic001G038000--Sobic003G141700 Sobic004G039400 Sobic004G039400 Sobic001G038000--Sobic004G039400 Sobic001G038000--Sobic005G044300 Sobic001G038000--Sobic004G170400 Sobic004G030000 Sobic004G030000 Sobic001G038000--Sobic004G030000 Sobic004G159000 Sobic004G159000 Sobic001G038000--Sobic004G159000 Sobic004G344800 Sobic004G344800 Sobic001G038000--Sobic004G344800 Sobic001G038000--Sobic002G395000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.