Gene annotation
Transcriptome id Sobic.003G359600.1
Synonym COI1, Sb03g040150
Functional annotation OsFBL4 - F-box domain and LRR containing protein, expressed
UniProt C5XPW1
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF428
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K13463; coronatine-insensitive protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G39940 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os01g63420.1 : OsFBL4 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a043785 , Zm00025a026823 , Zm00025a039620
Brachypodium KQK05982 , KQK10625 , KQK05983
Barley HORVU3Hr1G085210.3 , HORVU3Hr1G085210.2 , HORVU3Hr1G085210.1 , HORVU1Hr1G073230.2 , HORVU1Hr1G073230.3 , HORVU1Hr1G073230.1 , HORVU1Hr1G073230.6 , HORVU1Hr1G073230.4 , HORVU1Hr1G073230.5
Wheat TraesCS1D02G278400 , TraesCS3D02G360400 , TraesCS1A02G279100 , TraesCS1B02G288100 , TraesCS3B02G399200 , TraesCS3B02G399200 , TraesCS3D02G360400 , TraesCS3D02G360400 , TraesCS3A02G367500
Populus -


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cDNA sequences
Sobic.003G359600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G317100 DENN domain containing protein, expressed -
2 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
3 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
4 Sobic.006G182900 expressed protein -
5 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
6 Sobic.006G220000 bromodomain containing protein, expressed -
7 Sobic.001G365900 PWWP domain containing protein, expressed -
8 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
9 Sobic.010G143800 expressed protein -
10 Sobic.007G117400 expressed protein -
11 Sobic.005G032800 splicing factor, putative, expressed K13109: IK, RED, IK cytokine
12 Sobic.001G318432 - -
13 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
14 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
15 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
16 Sobic.001G159400 protein kinase domain containing protein, expressed -
17 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
18 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
19 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
20 Sobic.005G159000 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic003G359600 Sobic003G359600 Sobic004G317100 Sobic004G317100 Sobic003G359600--Sobic004G317100 Sobic002G134200 Sobic002G134200 Sobic003G359600--Sobic002G134200 Sobic007G193700 Sobic007G193700 Sobic003G359600--Sobic007G193700 Sobic006G182900 Sobic006G182900 Sobic003G359600--Sobic006G182900 Sobic003G280800 Sobic003G280800 Sobic003G359600--Sobic003G280800 Sobic006G220000 Sobic006G220000 Sobic003G359600--Sobic006G220000 Sobic001G365900 Sobic001G365900 Sobic003G359600--Sobic001G365900 Sobic007G161000 Sobic007G161000 Sobic003G359600--Sobic007G161000 Sobic010G143800 Sobic010G143800 Sobic003G359600--Sobic010G143800 Sobic004G181700 Sobic004G181700 Sobic004G317100--Sobic004G181700 Sobic001G498600 Sobic001G498600 Sobic004G317100--Sobic001G498600 Sobic004G317100--Sobic003G359600 Sobic004G317100--Sobic007G193700 Sobic001G159400 Sobic001G159400 Sobic004G317100--Sobic001G159400 Sobic010G256700 Sobic010G256700 Sobic004G317100--Sobic010G256700 Sobic004G317100--Sobic001G365900 Sobic010G112000 Sobic010G112000 Sobic004G317100--Sobic010G112000 Sobic002G173000 Sobic002G173000 Sobic004G317100--Sobic002G173000 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G309600 Sobic002G309600 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic004G263600 Sobic004G263600 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic003G396200 Sobic003G396200 Sobic007G193700--Sobic003G396200 Sobic003G429650 Sobic003G429650 Sobic006G182900--Sobic003G429650 Sobic006G048500 Sobic006G048500 Sobic006G182900--Sobic006G048500 Sobic006G182900--Sobic007G161000 Sobic006G182900--Sobic001G365900 Sobic007G116200 Sobic007G116200 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic006G182900--Sobic002G134200 Sobic001G214300 Sobic001G214300 Sobic006G182900--Sobic001G214300 Sobic009G209300 Sobic009G209300 Sobic006G182900--Sobic009G209300 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic006G052300 Sobic006G052300 Sobic006G220000--Sobic006G052300 Sobic004G039200 Sobic004G039200 Sobic006G220000--Sobic004G039200 Sobic004G264300 Sobic004G264300 Sobic006G220000--Sobic004G264300 Sobic009G065100 Sobic009G065100 Sobic006G220000--Sobic009G065100 Sobic006G220000--Sobic007G161000 Sobic006G274600 Sobic006G274600 Sobic006G220000--Sobic006G274600 Sobic002G151600 Sobic002G151600 Sobic006G220000--Sobic002G151600 Sobic008G011100 Sobic008G011100 Sobic006G220000--Sobic008G011100 Sobic006G220000--Sobic007G117400 Sobic010G206900 Sobic010G206900 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic001G365900--Sobic009G191000 Sobic004G034900 Sobic004G034900 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic007G161000--Sobic004G039200 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic007G161000--Sobic002G134200 Sobic008G028700 Sobic008G028700 Sobic007G161000--Sobic008G028700 Sobic005G027400 Sobic005G027400 Sobic010G143800--Sobic005G027400 Sobic001G081200 Sobic001G081200 Sobic010G143800--Sobic001G081200 Sobic010G143800--Sobic007G161000 Sobic004G006900 Sobic004G006900 Sobic010G143800--Sobic004G006900 Sobic001G529600 Sobic001G529600 Sobic010G143800--Sobic001G529600 Sobic010G143800--Sobic001G365900 Sobic002G294800 Sobic002G294800 Sobic010G143800--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic010G143800--Sobic010G021500 Sobic003G398700 Sobic003G398700 Sobic010G143800--Sobic003G398700
Octagon: transcription factors


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