Gene annotation
Transcriptome id Sobic.003G406800.1,Sobic.003G406800.2
Synonym Sb03g044170, AGL79
Functional annotation OsMADS65 - MADS-box family gene with MIKC* type-box, expressed
UniProt C5XGC1 , A0A1W0W168
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF213
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G30260 : AGAMOUS-like 79
RAP-DB (Rice) LOC_Os01g69850.1 : OsMADS65 - MADS-box family gene with MIKC* type-box, expressed
MaizeGDB (Corn) Zm00025a036663 , Zm00025a026241
Brachypodium PNT64543 , PNT73501 , PNT73500
Barley HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU3Hr1G095080.6 , HORVU3Hr1G095080.5 , HORVU3Hr1G095080.4
Wheat TraesCS3A02G432900 , TraesCS3D02G428000 , TraesCS3D02G427700 , TraesCS3A02G435000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G198100 FRA10AC1, putative, expressed K13121: protein FRA10AC1
2 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
3 Sobic.003G173950 - -
4 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
5 Sobic.003G268300 surp module family protein, putative, expressed -
6 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
7 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
8 Sobic.002G126500 RNA recognition motif containing protein, expressed -
9 Sobic.002G248400 ENT domain containing protein, expressed -
10 Sobic.002G161000 RNA recognition motif containing protein, expressed -
11 Sobic.003G029100 frigida, putative, expressed -
12 Sobic.004G030700 expressed protein -
13 Sobic.005G110472 - -
14 Sobic.004G213000 AT hook motif family protein, expressed -
15 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
16 Sobic.001G094000 expressed protein -
17 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
18 Sobic.006G060100 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
19 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
20 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic003G406800 Sobic003G406800 Sobic005G198100 Sobic005G198100 Sobic003G406800--Sobic005G198100 Sobic002G186000 Sobic002G186000 Sobic003G406800--Sobic002G186000 Sobic003G173950 Sobic003G173950 Sobic003G406800--Sobic003G173950 Sobic003G422300 Sobic003G422300 Sobic003G406800--Sobic003G422300 Sobic003G268300 Sobic003G268300 Sobic003G406800--Sobic003G268300 Sobic008G063000 Sobic008G063000 Sobic003G406800--Sobic008G063000 Sobic003G197800 Sobic003G197800 Sobic003G406800--Sobic003G197800 Sobic002G126500 Sobic002G126500 Sobic003G406800--Sobic002G126500 Sobic002G248400 Sobic002G248400 Sobic003G406800--Sobic002G248400 Sobic005G198100--Sobic002G248400 Sobic005G198100--Sobic003G173950 Sobic001G347300 Sobic001G347300 Sobic005G198100--Sobic001G347300 Sobic003G200200 Sobic003G200200 Sobic005G198100--Sobic003G200200 Sobic006G013500 Sobic006G013500 Sobic005G198100--Sobic006G013500 Sobic001G155000 Sobic001G155000 Sobic005G198100--Sobic001G155000 Sobic003G241200 Sobic003G241200 Sobic005G198100--Sobic003G241200 Sobic003G170100 Sobic003G170100 Sobic005G198100--Sobic003G170100 Sobic005G198100--Sobic003G268300 Sobic002G186000--Sobic003G197800 Sobic002G157000 Sobic002G157000 Sobic002G186000--Sobic002G157000 Sobic002G186000--Sobic002G248400 Sobic001G094000 Sobic001G094000 Sobic002G186000--Sobic001G094000 Sobic002G186000--Sobic003G200200 Sobic007G011400 Sobic007G011400 Sobic002G186000--Sobic007G011400 Sobic002G058300 Sobic002G058300 Sobic002G186000--Sobic002G058300 Sobic001G162300 Sobic001G162300 Sobic002G186000--Sobic001G162300 Sobic003G220200 Sobic003G220200 Sobic002G186000--Sobic003G220200 Sobic001G356500 Sobic001G356500 Sobic003G173950--Sobic001G356500 Sobic003G173950--Sobic003G241200 Sobic003G173950--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic004G084300 Sobic004G084300 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic001G206100 Sobic001G206100 Sobic003G173950--Sobic001G206100 Sobic003G422300--Sobic003G268300 Sobic003G422300--Sobic002G248400 Sobic006G128900 Sobic006G128900 Sobic003G422300--Sobic006G128900 Sobic003G422300--Sobic001G094000 Sobic003G422300--Sobic002G157000 Sobic001G090400 Sobic001G090400 Sobic003G422300--Sobic001G090400 Sobic006G060100 Sobic006G060100 Sobic003G422300--Sobic006G060100 Sobic001G511500 Sobic001G511500 Sobic003G422300--Sobic001G511500 Sobic008G078100 Sobic008G078100 Sobic003G422300--Sobic008G078100 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic008G173900 Sobic008G173900 Sobic003G268300--Sobic008G173900 Sobic008G063000--Sobic001G094000 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic008G063000--Sobic002G157000 Sobic008G063000--Sobic003G200200 Sobic008G063000--Sobic008G173900 Sobic002G006900 Sobic002G006900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic004G145500 Sobic004G145500 Sobic008G063000--Sobic004G145500 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic009G065100 Sobic009G065100 Sobic003G197800--Sobic009G065100 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic003G197800--Sobic001G206100 Sobic010G236400 Sobic010G236400 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic008G179700 Sobic008G179700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic002G248400--Sobic002G157000 Sobic003G108700 Sobic003G108700 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.