Gene annotation
Transcriptome id Sobic.004G058700.1
Synonym APL, Sb04g004930, WDY,
Functional annotation Homeodomain-like superfamily protein (PubMedID : 26465154)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Myb transcription factor, putative, expressed
UniProt C5XW63
Pfam PF00249 PF14379
Panther DB PTHR31499 PTHR31499:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79430 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os02g07770.1 : Myb transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a051740 , Zm00025a019122
Brachypodium KQJ93578 , KQJ93576 , KQJ93577 , PNT65994
Barley HORVU6Hr1G031470.20 , HORVU6Hr1G031470.21 , HORVU6Hr1G031470.22 , HORVU6Hr1G031470.23 , HORVU6Hr1G031470.24 , HORVU6Hr1G031470.25 , HORVU6Hr1G031470.26 , HORVU6Hr1G031470.27 , HORVU6Hr1G031470.1 , HORVU6Hr1G031470.3 , HORVU6Hr1G031470.2 , HORVU6Hr1G031470.5 , HORVU6Hr1G031470.4 , HORVU6Hr1G031470.7 , HORVU6Hr1G031470.6 , HORVU6Hr1G031470.9 , HORVU6Hr1G031470.8 , HORVU7Hr1G109130.9 , HORVU7Hr1G109130.8 , HORVU7Hr1G109130.5 , HORVU7Hr1G109130.4 , HORVU7Hr1G109130.7 , HORVU7Hr1G109130.6 , HORVU7Hr1G109130.1 , HORVU7Hr1G109130.3 , HORVU7Hr1G109130.2 , HORVU7Hr1G109130.11 , HORVU7Hr1G109130.10 , HORVU7Hr1G109130.13 , HORVU7Hr1G109130.12 , HORVU7Hr1G109130.15 , HORVU7Hr1G109130.14 , HORVU6Hr1G031470.15 , HORVU6Hr1G031470.14 , HORVU6Hr1G031470.17 , HORVU6Hr1G031470.16 , HORVU6Hr1G031470.11 , HORVU6Hr1G031470.10 , HORVU6Hr1G031470.13 , HORVU6Hr1G031470.12 , HORVU6Hr1G031470.19 , HORVU6Hr1G031470.18
Wheat TraesCS7B02G385700 , TraesCS6A02G155400 , TraesCS6A02G155400 , TraesCS6A02G155400 , TraesCS6B02G183500 , TraesCS6B02G183500 , TraesCS6B02G183500 , TraesCS6B02G183500 , TraesCS6D02G245900 , TraesCS6D02G245900 , TraesCS7D02G470000 , TraesCS7D02G470000 , TraesCS7A02G483100 , TraesCS6D02G145300 , TraesCS6D02G145300 , TraesCS6D02G145300 , TraesCS6D02G145300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G470900 sulfate transporter, putative, expressed K17469: sulfate transporter 2, low-affinity
2 Sobic.005G110502 - -
3 Sobic.010G153900 Spermidine synthase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@"OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659935)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
4 Sobic.010G095000 kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
5 Sobic.006G134400 protein FAM133, putative, expressed -
6 Sobic.001G076900 Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed -
7 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
8 Sobic.002G421300 stress responsive protein, putative, expressed -
9 Sobic.010G023700 Transketolase(PubMedID : 26186930)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
10 Sobic.008G115900 mitochondrial carrier protein, putative, expressed -
11 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
12 Sobic.001G020100 expressed protein -
13 Sobic.007G140800 Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase)
14 Sobic.001G420300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.004G269000 syntaxin, putative, expressed K08488: syntaxin 7
16 Sobic.006G008700 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase
17 Sobic.008G108400 expressed protein -
18 Sobic.001G498000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.009G063100 Mitochondrial substrate carrier family protein(PubMedID : 26465154)@mitochondrial carrier protein, putative, expressed -
20 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase


Gene co-expression network
sample Sobic004G058700 Sobic004G058700 Sobic001G470900 Sobic001G470900 Sobic004G058700--Sobic001G470900 Sobic005G110502 Sobic005G110502 Sobic004G058700--Sobic005G110502 Sobic010G153900 Sobic010G153900 Sobic004G058700--Sobic010G153900 Sobic010G095000 Sobic010G095000 Sobic004G058700--Sobic010G095000 Sobic006G134400 Sobic006G134400 Sobic004G058700--Sobic006G134400 Sobic001G076900 Sobic001G076900 Sobic004G058700--Sobic001G076900 Sobic006G130300 Sobic006G130300 Sobic004G058700--Sobic006G130300 Sobic002G421300 Sobic002G421300 Sobic004G058700--Sobic002G421300 Sobic010G023700 Sobic010G023700 Sobic004G058700--Sobic010G023700 Sobic001G087700 Sobic001G087700 Sobic001G470900--Sobic001G087700 Sobic002G086800 Sobic002G086800 Sobic001G470900--Sobic002G086800 Sobic001G496300 Sobic001G496300 Sobic001G470900--Sobic001G496300 Sobic006G220300 Sobic006G220300 Sobic001G470900--Sobic006G220300 Sobic001G110900 Sobic001G110900 Sobic001G470900--Sobic001G110900 Sobic001G470900--Sobic004G058700 Sobic003G389700 Sobic003G389700 Sobic001G470900--Sobic003G389700 Sobic001G498000 Sobic001G498000 Sobic001G470900--Sobic001G498000 Sobic004G332100 Sobic004G332100 Sobic001G470900--Sobic004G332100 Sobic001G329400 Sobic001G329400 Sobic005G110502--Sobic001G329400 Sobic009G140800 Sobic009G140800 Sobic005G110502--Sobic009G140800 Sobic004G283100 Sobic004G283100 Sobic005G110502--Sobic004G283100 Sobic006G160400 Sobic006G160400 Sobic005G110502--Sobic006G160400 Sobic004G125700 Sobic004G125700 Sobic005G110502--Sobic004G125700 Sobic004G238600 Sobic004G238600 Sobic005G110502--Sobic004G238600 Sobic002G098800 Sobic002G098800 Sobic005G110502--Sobic002G098800 Sobic008G115900 Sobic008G115900 Sobic005G110502--Sobic008G115900 Sobic008G104601 Sobic008G104601 Sobic005G110502--Sobic008G104601 Sobic007G140800 Sobic007G140800 Sobic010G153900--Sobic007G140800 Sobic008G188600 Sobic008G188600 Sobic010G153900--Sobic008G188600 Sobic009G043000 Sobic009G043000 Sobic010G153900--Sobic009G043000 Sobic010G201700 Sobic010G201700 Sobic010G153900--Sobic010G201700 Sobic003G303700 Sobic003G303700 Sobic010G153900--Sobic003G303700 Sobic010G153900--Sobic010G095000 Sobic006G207800 Sobic006G207800 Sobic010G153900--Sobic006G207800 Sobic003G241900 Sobic003G241900 Sobic010G153900--Sobic003G241900 Sobic001G020100 Sobic001G020100 Sobic010G153900--Sobic001G020100 Sobic010G095000--Sobic001G076900 Sobic003G234400 Sobic003G234400 Sobic010G095000--Sobic003G234400 Sobic006G008700 Sobic006G008700 Sobic010G095000--Sobic006G008700 Sobic005G056400 Sobic005G056400 Sobic010G095000--Sobic005G056400 Sobic010G095000--Sobic010G153900 Sobic004G305800 Sobic004G305800 Sobic010G095000--Sobic004G305800 Sobic010G095000--Sobic010G201700 Sobic010G095000--Sobic004G125700 Sobic005G200200 Sobic005G200200 Sobic010G095000--Sobic005G200200 Sobic007G171600 Sobic007G171600 Sobic006G134400--Sobic007G171600 Sobic006G134400--Sobic002G098800 Sobic009G196800 Sobic009G196800 Sobic006G134400--Sobic009G196800 Sobic003G069100 Sobic003G069100 Sobic006G134400--Sobic003G069100 Sobic006G134400--Sobic005G110502 Sobic001G233400 Sobic001G233400 Sobic006G134400--Sobic001G233400 Sobic003G199800 Sobic003G199800 Sobic006G134400--Sobic003G199800 Sobic010G183100 Sobic010G183100 Sobic006G134400--Sobic010G183100 Sobic003G069000 Sobic003G069000 Sobic006G134400--Sobic003G069000 Sobic001G076900--Sobic005G056400 Sobic003G370000 Sobic003G370000 Sobic001G076900--Sobic003G370000 Sobic001G076900--Sobic010G095000 Sobic001G076900--Sobic001G020100 Sobic001G076900--Sobic004G305800 Sobic001G076900--Sobic003G234400 Sobic005G202500 Sobic005G202500 Sobic001G076900--Sobic005G202500 Sobic002G370600 Sobic002G370600 Sobic001G076900--Sobic002G370600 Sobic001G076900--Sobic004G283100 Sobic001G100000 Sobic001G100000 Sobic006G130300--Sobic001G100000 Sobic006G238200 Sobic006G238200 Sobic006G130300--Sobic006G238200 Sobic006G130300--Sobic007G140800 Sobic006G130300--Sobic001G020100 Sobic006G130300--Sobic001G329400 Sobic001G491000 Sobic001G491000 Sobic006G130300--Sobic001G491000 Sobic006G130300--Sobic004G283100 Sobic006G130300--Sobic008G115900 Sobic006G130300--Sobic006G207800 Sobic002G421300--Sobic003G241900 Sobic002G421300--Sobic010G153900 Sobic004G026300 Sobic004G026300 Sobic002G421300--Sobic004G026300 Sobic008G108400 Sobic008G108400 Sobic002G421300--Sobic008G108400 Sobic002G421300--Sobic003G303700 Sobic002G421300--Sobic003G199800 Sobic002G421300--Sobic009G043000 Sobic003G131000 Sobic003G131000 Sobic002G421300--Sobic003G131000 Sobic002G421300--Sobic002G098800 Sobic002G051100 Sobic002G051100 Sobic010G023700--Sobic002G051100 Sobic009G063100 Sobic009G063100 Sobic010G023700--Sobic009G063100 Sobic001G129000 Sobic001G129000 Sobic010G023700--Sobic001G129000 Sobic004G272100 Sobic004G272100 Sobic010G023700--Sobic004G272100 Sobic010G023700--Sobic004G125700 Sobic001G102800 Sobic001G102800 Sobic010G023700--Sobic001G102800 Sobic010G023700--Sobic007G140800 Sobic002G277100 Sobic002G277100 Sobic010G023700--Sobic002G277100 Sobic010G023700--Sobic001G020100
Octagon: transcription factors


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