Gene annotation
Transcriptome id Sobic.004G078900.2,Sobic.004G078900.1
Synonym Sb04g006510
Functional annotation AGAP003371-PA, putative, expressed
UniProt C5XXG5 , A0A1Z5RM77
Pfam PF09752
Panther DB PTHR13617
NCBI CDD KOG1551; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12150 : -
RAP-DB (Rice) LOC_Os02g10160.1 : AGAP003371-PA, putative, expressed
MaizeGDB (Corn) Zm00025a019647
Brachypodium KQJ93846 , KQJ93847 , KQJ93845 , KQJ93848 , KQJ93849
Barley HORVU0Hr1G015700.9 , HORVU0Hr1G015700.8 , HORVU0Hr1G015700.3 , HORVU0Hr1G015700.2 , HORVU0Hr1G015700.1 , HORVU0Hr1G015700.7 , HORVU0Hr1G015700.6 , HORVU0Hr1G015700.5 , HORVU0Hr1G015700.4
Wheat TraesCS6B02G193100 , TraesCS6B02G193100 , TraesCS6D02G154300 , TraesCS6A02G165700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G335300 uncharacterized Cys-rich domain containing protein, putative, expressed -
2 Sobic.009G232800 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
3 Sobic.010G021100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K12734: peptidyl-prolyl cis-trans isomerase-like 3
4 Sobic.007G147600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
5 Sobic.004G024200 similar to Bax inhibitor 1(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transmembrane BAX inhibitor motif-containing protein, putative, expressed -
6 Sobic.002G223600 MORN repeat domain containing protein, expressed -
7 Sobic.001G101500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
8 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
9 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
10 Sobic.001G399300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphotase protein, putative, expressed -
11 Sobic.004G306300 expressed protein -
12 Sobic.001G034600 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
13 Sobic.001G154400 expp1 protein precursor, putative, expressed -
14 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
15 Sobic.004G048700 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
16 Sobic.001G204900 cystathionin beta synthase protein, putative, expressed -
17 Sobic.003G357300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.002G315700 NC domain-containing protein, putative, expressed -
19 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
20 Sobic.008G118700 respiratory burst oxidase, putative, expressed -


Gene co-expression network
sample Sobic004G078900 Sobic004G078900 Sobic002G335300 Sobic002G335300 Sobic004G078900--Sobic002G335300 Sobic009G232800 Sobic009G232800 Sobic004G078900--Sobic009G232800 Sobic010G021100 Sobic010G021100 Sobic004G078900--Sobic010G021100 Sobic007G147600 Sobic007G147600 Sobic004G078900--Sobic007G147600 Sobic004G024200 Sobic004G024200 Sobic004G078900--Sobic004G024200 Sobic002G223600 Sobic002G223600 Sobic004G078900--Sobic002G223600 Sobic001G101500 Sobic001G101500 Sobic004G078900--Sobic001G101500 Sobic004G032000 Sobic004G032000 Sobic004G078900--Sobic004G032000 Sobic004G122000 Sobic004G122000 Sobic004G078900--Sobic004G122000 Sobic004G212900 Sobic004G212900 Sobic002G335300--Sobic004G212900 Sobic003G344600 Sobic003G344600 Sobic002G335300--Sobic003G344600 Sobic003G357300 Sobic003G357300 Sobic002G335300--Sobic003G357300 Sobic001G009500 Sobic001G009500 Sobic002G335300--Sobic001G009500 Sobic009G074100 Sobic009G074100 Sobic002G335300--Sobic009G074100 Sobic008G103700 Sobic008G103700 Sobic002G335300--Sobic008G103700 Sobic006G046900 Sobic006G046900 Sobic002G335300--Sobic006G046900 Sobic009G243400 Sobic009G243400 Sobic002G335300--Sobic009G243400 Sobic003G211200 Sobic003G211200 Sobic002G335300--Sobic003G211200 Sobic001G389900 Sobic001G389900 Sobic009G232800--Sobic001G389900 Sobic003G403400 Sobic003G403400 Sobic009G232800--Sobic003G403400 Sobic002G251900 Sobic002G251900 Sobic009G232800--Sobic002G251900 Sobic006G062800 Sobic006G062800 Sobic009G232800--Sobic006G062800 Sobic002G046100 Sobic002G046100 Sobic009G232800--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic009G232800--Sobic003G285800 Sobic009G232800--Sobic004G024200 Sobic001G447100 Sobic001G447100 Sobic009G232800--Sobic001G447100 Sobic003G249800 Sobic003G249800 Sobic009G232800--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic010G021100--Sobic001G037000 Sobic010G066300 Sobic010G066300 Sobic010G021100--Sobic010G066300 Sobic004G247200 Sobic004G247200 Sobic010G021100--Sobic004G247200 Sobic001G204900 Sobic001G204900 Sobic010G021100--Sobic001G204900 Sobic010G217900 Sobic010G217900 Sobic010G021100--Sobic010G217900 Sobic009G222600 Sobic009G222600 Sobic010G021100--Sobic009G222600 Sobic002G205300 Sobic002G205300 Sobic010G021100--Sobic002G205300 Sobic001G047700 Sobic001G047700 Sobic010G021100--Sobic001G047700 Sobic001G422900 Sobic001G422900 Sobic010G021100--Sobic001G422900 Sobic008G174650 Sobic008G174650 Sobic007G147600--Sobic008G174650 Sobic007G147700 Sobic007G147700 Sobic007G147600--Sobic007G147700 Sobic003G377100 Sobic003G377100 Sobic007G147600--Sobic003G377100 Sobic009G152600 Sobic009G152600 Sobic007G147600--Sobic009G152600 Sobic009G189501 Sobic009G189501 Sobic007G147600--Sobic009G189501 Sobic008G118700 Sobic008G118700 Sobic007G147600--Sobic008G118700 Sobic004G171400 Sobic004G171400 Sobic007G147600--Sobic004G171400 Sobic004G306300 Sobic004G306300 Sobic007G147600--Sobic004G306300 Sobic002G393400 Sobic002G393400 Sobic007G147600--Sobic002G393400 Sobic004G024200--Sobic001G447100 Sobic003G349700 Sobic003G349700 Sobic004G024200--Sobic003G349700 Sobic007G176600 Sobic007G176600 Sobic004G024200--Sobic007G176600 Sobic004G086400 Sobic004G086400 Sobic004G024200--Sobic004G086400 Sobic006G207100 Sobic006G207100 Sobic004G024200--Sobic006G207100 Sobic009G131400 Sobic009G131400 Sobic004G024200--Sobic009G131400 Sobic004G146000 Sobic004G146000 Sobic004G024200--Sobic004G146000 Sobic003G041200 Sobic003G041200 Sobic004G024200--Sobic003G041200 Sobic001G108200 Sobic001G108200 Sobic004G024200--Sobic001G108200 Sobic007G192300 Sobic007G192300 Sobic002G223600--Sobic007G192300 Sobic010G028200 Sobic010G028200 Sobic002G223600--Sobic010G028200 Sobic009G181800 Sobic009G181800 Sobic002G223600--Sobic009G181800 Sobic002G223600--Sobic002G335300 Sobic003G160700 Sobic003G160700 Sobic002G223600--Sobic003G160700 Sobic002G223600--Sobic004G146000 Sobic001G475500 Sobic001G475500 Sobic002G223600--Sobic001G475500 Sobic002G223600--Sobic006G046900 Sobic002G223600--Sobic002G251900 Sobic010G217800 Sobic010G217800 Sobic001G101500--Sobic010G217800 Sobic010G220200 Sobic010G220200 Sobic001G101500--Sobic010G220200 Sobic008G177800 Sobic008G177800 Sobic001G101500--Sobic008G177800 Sobic002G415600 Sobic002G415600 Sobic001G101500--Sobic002G415600 Sobic009G255500 Sobic009G255500 Sobic001G101500--Sobic009G255500 Sobic010G234600 Sobic010G234600 Sobic001G101500--Sobic010G234600 Sobic004G036600 Sobic004G036600 Sobic001G101500--Sobic004G036600 Sobic010G234700 Sobic010G234700 Sobic001G101500--Sobic010G234700 Sobic002G294700 Sobic002G294700 Sobic001G101500--Sobic002G294700 Sobic001G517600 Sobic001G517600 Sobic004G032000--Sobic001G517600 Sobic003G129800 Sobic003G129800 Sobic004G032000--Sobic003G129800 Sobic005G111100 Sobic005G111100 Sobic004G032000--Sobic005G111100 Sobic001G128400 Sobic001G128400 Sobic004G032000--Sobic001G128400 Sobic009G223300 Sobic009G223300 Sobic004G032000--Sobic009G223300 Sobic009G191200 Sobic009G191200 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic003G109600 Sobic003G109600 Sobic004G032000--Sobic003G109600 Sobic005G050500 Sobic005G050500 Sobic004G032000--Sobic005G050500 Sobic009G034400 Sobic009G034400 Sobic004G122000--Sobic009G034400 Sobic004G048700 Sobic004G048700 Sobic004G122000--Sobic004G048700 Sobic009G036900 Sobic009G036900 Sobic004G122000--Sobic009G036900 Sobic002G176400 Sobic002G176400 Sobic004G122000--Sobic002G176400 Sobic003G416600 Sobic003G416600 Sobic004G122000--Sobic003G416600 Sobic001G036700 Sobic001G036700 Sobic004G122000--Sobic001G036700 Sobic008G108500 Sobic008G108500 Sobic004G122000--Sobic008G108500 Sobic007G192100 Sobic007G192100 Sobic004G122000--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic004G122000--Sobic001G285300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.