Gene annotation
Transcriptome id Sobic.004G183100.1
Synonym Sb04g023230
Functional annotation pentatricopeptide repeat domain containing protein, putative, expressed
UniProt C5XUZ8
Pfam PF12854 PF13041
Panther DB PTHR24015 PTHR24015:SF836
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os01g57410.3 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020728
Brachypodium -
Barley HORVU3Hr1G077040.11 , HORVU3Hr1G077040.10 , HORVU3Hr1G077040.3 , HORVU3Hr1G077040.2 , HORVU3Hr1G077040.1 , HORVU3Hr1G077040.7 , HORVU3Hr1G077040.6 , HORVU3Hr1G077040.5 , HORVU3Hr1G077040.4 , HORVU3Hr1G077040.9 , HORVU3Hr1G077040.8
Wheat TraesCS3D02G315600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G119250 - -
2 Sobic.004G311100 -(PubMedID : 29017446)@-(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
3 Sobic.002G198600 -(PubMedID : 29017446)@expressed protein -
4 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
5 Sobic.001G029100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G222500 phosphoglucomutase, putative, expressed K01835: phosphoglucomutase
7 Sobic.001G308800 expressed protein K18065: Cdc25 family phosphatase
8 Sobic.001G104800 expressed protein -
9 Sobic.009G183700 XP_002441313.1 plastidic phosphoglycerate kinase(PubMedID : 26904072)@phosphoglycerate kinase(PubMedID : 29017446)@phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
10 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
11 Sobic.003G387800 unknown(PubMedID : 29017446)@rhodanese-like domain containing protein, putative, expressed -
12 Sobic.004G175500 OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed K00434: L-ascorbate peroxidase
13 Sobic.009G143100 cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed K02636: cytochrome b6-f complex iron-sulfur subunit
14 Sobic.004G239100 -(PubMedID : 26465154)@expressed protein -
15 Sobic.007G143700 immunophilin(PubMedID : 29017446)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
17 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
18 Sobic.010G277600 - -
19 Sobic.003G386300 expressed protein -
20 Sobic.008G051000 magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed K03405: chlI, magnesium chelatase subunit I


Gene co-expression network
sample Sobic004G183100 Sobic004G183100 Sobic008G119250 Sobic008G119250 Sobic004G183100--Sobic008G119250 Sobic004G311100 Sobic004G311100 Sobic004G183100--Sobic004G311100 Sobic002G198600 Sobic002G198600 Sobic004G183100--Sobic002G198600 Sobic009G030900 Sobic009G030900 Sobic004G183100--Sobic009G030900 Sobic001G029100 Sobic001G029100 Sobic004G183100--Sobic001G029100 Sobic003G222500 Sobic003G222500 Sobic004G183100--Sobic003G222500 Sobic001G308800 Sobic001G308800 Sobic004G183100--Sobic001G308800 Sobic001G104800 Sobic001G104800 Sobic004G183100--Sobic001G104800 Sobic009G183700 Sobic009G183700 Sobic004G183100--Sobic009G183700 Sobic008G119250--Sobic004G183100 Sobic008G119300 Sobic008G119300 Sobic008G119250--Sobic008G119300 Sobic007G113600 Sobic007G113600 Sobic008G119250--Sobic007G113600 Sobic002G267900 Sobic002G267900 Sobic008G119250--Sobic002G267900 Sobic002G274200 Sobic002G274200 Sobic008G119250--Sobic002G274200 Sobic008G172700 Sobic008G172700 Sobic008G119250--Sobic008G172700 Sobic001G201900 Sobic001G201900 Sobic008G119250--Sobic001G201900 Sobic008G119250--Sobic009G183700 Sobic010G005500 Sobic010G005500 Sobic008G119250--Sobic010G005500 Sobic008G112300 Sobic008G112300 Sobic004G311100--Sobic008G112300 Sobic007G143700 Sobic007G143700 Sobic004G311100--Sobic007G143700 Sobic003G386300 Sobic003G386300 Sobic004G311100--Sobic003G386300 Sobic004G335800 Sobic004G335800 Sobic004G311100--Sobic004G335800 Sobic001G122400 Sobic001G122400 Sobic004G311100--Sobic001G122400 Sobic001G527100 Sobic001G527100 Sobic004G311100--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G311100--Sobic004G116100 Sobic003G328200 Sobic003G328200 Sobic004G311100--Sobic003G328200 Sobic002G271700 Sobic002G271700 Sobic004G311100--Sobic002G271700 Sobic003G433900 Sobic003G433900 Sobic002G198600--Sobic003G433900 Sobic004G175500 Sobic004G175500 Sobic002G198600--Sobic004G175500 Sobic009G091800 Sobic009G091800 Sobic002G198600--Sobic009G091800 Sobic003G132100 Sobic003G132100 Sobic002G198600--Sobic003G132100 Sobic002G198600--Sobic003G386300 Sobic002G198600--Sobic009G030900 Sobic006G248200 Sobic006G248200 Sobic002G198600--Sobic006G248200 Sobic010G011800 Sobic010G011800 Sobic002G198600--Sobic010G011800 Sobic002G198600--Sobic004G311100 Sobic009G030900--Sobic010G005500 Sobic010G277600 Sobic010G277600 Sobic009G030900--Sobic010G277600 Sobic007G052400 Sobic007G052400 Sobic009G030900--Sobic007G052400 Sobic009G030900--Sobic009G183700 Sobic003G387800 Sobic003G387800 Sobic009G030900--Sobic003G387800 Sobic009G059300 Sobic009G059300 Sobic009G030900--Sobic009G059300 Sobic003G002300 Sobic003G002300 Sobic009G030900--Sobic003G002300 Sobic008G171300 Sobic008G171300 Sobic009G030900--Sobic008G171300 Sobic009G030900--Sobic004G175500 Sobic001G029100--Sobic004G175500 Sobic001G029100--Sobic009G030900 Sobic009G143100 Sobic009G143100 Sobic001G029100--Sobic009G143100 Sobic001G029100--Sobic003G387800 Sobic002G033800 Sobic002G033800 Sobic001G029100--Sobic002G033800 Sobic007G004800 Sobic007G004800 Sobic001G029100--Sobic007G004800 Sobic001G029100--Sobic002G198600 Sobic006G093900 Sobic006G093900 Sobic001G029100--Sobic006G093900 Sobic007G071500 Sobic007G071500 Sobic001G029100--Sobic007G071500 Sobic003G222500--Sobic004G175500 Sobic003G222500--Sobic003G387800 Sobic003G222500--Sobic002G198600 Sobic002G065200 Sobic002G065200 Sobic003G222500--Sobic002G065200 Sobic003G222500--Sobic004G183100 Sobic002G288300 Sobic002G288300 Sobic003G222500--Sobic002G288300 Sobic003G222500--Sobic009G030900 Sobic003G222500--Sobic010G005500 Sobic004G012900 Sobic004G012900 Sobic003G222500--Sobic004G012900 Sobic001G308800--Sobic001G029100 Sobic001G308800--Sobic009G143100 Sobic001G295300 Sobic001G295300 Sobic001G308800--Sobic001G295300 Sobic001G447700 Sobic001G447700 Sobic001G308800--Sobic001G447700 Sobic001G308800--Sobic001G104800 Sobic001G291900 Sobic001G291900 Sobic001G308800--Sobic001G291900 Sobic001G308800--Sobic002G033800 Sobic001G308800--Sobic004G183100 Sobic001G308800--Sobic009G030900 Sobic001G104800--Sobic001G291900 Sobic001G104800--Sobic009G030900 Sobic001G368500 Sobic001G368500 Sobic001G104800--Sobic001G368500 Sobic001G469933 Sobic001G469933 Sobic001G104800--Sobic001G469933 Sobic001G104800--Sobic001G122400 Sobic003G324700 Sobic003G324700 Sobic001G104800--Sobic003G324700 Sobic001G104800--Sobic004G335800 Sobic007G090400 Sobic007G090400 Sobic001G104800--Sobic007G090400 Sobic002G152800 Sobic002G152800 Sobic001G104800--Sobic002G152800 Sobic009G183700--Sobic010G277600 Sobic002G277100 Sobic002G277100 Sobic009G183700--Sobic002G277100 Sobic009G183700--Sobic010G005500 Sobic009G183700--Sobic003G002300 Sobic009G183700--Sobic007G052400 Sobic007G004600 Sobic007G004600 Sobic009G183700--Sobic007G004600 Sobic009G183700--Sobic009G030900 Sobic009G183700--Sobic003G387800 Sobic009G140600 Sobic009G140600 Sobic009G183700--Sobic009G140600
Octagon: transcription factors


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