Gene annotation
Transcriptome id Sobic.004G204200.1
Synonym Sb04g025045, EMB2423
Functional annotation EMB2423, putative, expressed
UniProt A0A194YQQ3
Pfam PF10193
Panther DB PTHR15830
NCBI CDD KOG4346; Uncharacterized conserved protein
KEGG Orthology K11137; TELO2, telomere length regulation protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48470 : embryo defective 2423
RAP-DB (Rice) LOC_Os02g38680.1 : EMB2423, putative, expressed
MaizeGDB (Corn) Zm00025a021289
Brachypodium PNT68971 , PNT68972 , PNT68973 , PNT68974 , KQK00190
Barley HORVU6Hr1G054070.12 , HORVU6Hr1G054070.13 , HORVU6Hr1G054070.10 , HORVU6Hr1G054070.11 , HORVU6Hr1G054070.16 , HORVU6Hr1G054070.17 , HORVU6Hr1G054070.14 , HORVU6Hr1G054070.15 , HORVU6Hr1G054070.18 , HORVU6Hr1G054070.19 , HORVU6Hr1G054070.8 , HORVU6Hr1G054070.9 , HORVU6Hr1G054070.1 , HORVU6Hr1G054070.2 , HORVU6Hr1G054070.3 , HORVU6Hr1G054070.4 , HORVU6Hr1G054070.5 , HORVU6Hr1G054070.6 , HORVU6Hr1G054070.7 , HORVU6Hr1G054070.23 , HORVU6Hr1G054070.22 , HORVU6Hr1G054070.21 , HORVU6Hr1G054070.20 , HORVU6Hr1G054070.26 , HORVU6Hr1G054070.25 , HORVU6Hr1G054070.24
Wheat TraesCS6D02G194900 , TraesCS6B02G241500 , TraesCS6B02G241500 , TraesCS6D02G194900 , TraesCS6B02G241500 , TraesCS6A02G212700 , TraesCS6A02G212700 , TraesCS6D02G195100 , TraesCS6B02G241500
Populus -


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cDNA sequences
Sobic.004G204200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.002G310200 expressed protein -
3 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
4 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
6 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
7 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
8 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
9 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
10 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
11 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
12 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
13 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
14 Sobic.004G182100 expressed protein -
15 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
16 Sobic.007G161300 VHS and GAT domain containing protein, expressed -
17 Sobic.003G087400 - -
18 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
19 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
20 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -


Gene co-expression network
sample Sobic004G204200 Sobic004G204200 Sobic002G158700 Sobic002G158700 Sobic004G204200--Sobic002G158700 Sobic002G310200 Sobic002G310200 Sobic004G204200--Sobic002G310200 Sobic001G474600 Sobic001G474600 Sobic004G204200--Sobic001G474600 Sobic008G067600 Sobic008G067600 Sobic004G204200--Sobic008G067600 Sobic001G311500 Sobic001G311500 Sobic004G204200--Sobic001G311500 Sobic008G014500 Sobic008G014500 Sobic004G204200--Sobic008G014500 Sobic003G056100 Sobic003G056100 Sobic004G204200--Sobic003G056100 Sobic002G275600 Sobic002G275600 Sobic004G204200--Sobic002G275600 Sobic001G167200 Sobic001G167200 Sobic004G204200--Sobic001G167200 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic008G047800 Sobic008G047800 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic001G474600--Sobic007G217000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic001G090400 Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic009G000500 Sobic009G000500 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic010G139000 Sobic010G139000 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic005G112300 Sobic005G112300 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic004G314000 Sobic004G314000 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic010G166400 Sobic010G166400 Sobic008G014500--Sobic010G166400 Sobic001G091400 Sobic001G091400 Sobic008G014500--Sobic001G091400 Sobic006G200700 Sobic006G200700 Sobic008G014500--Sobic006G200700 Sobic010G236400 Sobic010G236400 Sobic008G014500--Sobic010G236400 Sobic008G014500--Sobic002G275600 Sobic007G075900 Sobic007G075900 Sobic008G014500--Sobic007G075900 Sobic010G209400 Sobic010G209400 Sobic008G014500--Sobic010G209400 Sobic009G119000 Sobic009G119000 Sobic008G014500--Sobic009G119000 Sobic001G522600 Sobic001G522600 Sobic008G014500--Sobic001G522600 Sobic003G056100--Sobic001G125200 Sobic002G006900 Sobic002G006900 Sobic003G056100--Sobic002G006900 Sobic003G056100--Sobic008G067600 Sobic003G056100--Sobic001G512700 Sobic001G497300 Sobic001G497300 Sobic003G056100--Sobic001G497300 Sobic002G315200 Sobic002G315200 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic003G056100--Sobic007G217000 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic002G275600--Sobic009G247400 Sobic002G275600--Sobic008G014500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic002G275600--Sobic010G209400 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic001G167200--Sobic004G018300 Sobic005G015900 Sobic005G015900 Sobic001G167200--Sobic005G015900 Sobic008G011100 Sobic008G011100 Sobic001G167200--Sobic008G011100 Sobic001G167200--Sobic001G090400 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300
Octagon: transcription factors


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