Gene annotation
Transcriptome id Sobic.004G245000.2,Sobic.004G245000.1
Synonym ATCRE1, WOL, CRE1, AHK4, WOL1, Sb04g028550
Functional annotation histidine kinase, putative, expressed
UniProt C5XZ86 , A0A1Z5RPS7
Pfam PF00512 PF02518 PF00072 PF03924
Panther DB PTHR24423 PTHR24423:SF566
NCBI CDD KOG0519; Sensory transduction histidine kinase
KEGG Orthology K14489; arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
Gene Ontology GO:0007165; signal transduction GO:0000155phosphorelay sensor kinase activity GO:0000160phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT2G01830 : CHASE domain containing histidine kinase protein
RAP-DB (Rice) LOC_Os02g50480.1 : histidine kinase, putative, expressed
MaizeGDB (Corn) Zm00025a021971 , Zm00025a032679
Brachypodium PNT69671 , KQK02010
Barley HORVU6Hr1G077070.5 , HORVU4Hr1G008210.7 , HORVU4Hr1G008210.6 , HORVU4Hr1G008210.5 , HORVU4Hr1G008210.4 , HORVU4Hr1G008210.1 , HORVU6Hr1G077070.3 , HORVU4Hr1G008210.9 , HORVU4Hr1G008210.8 , HORVU6Hr1G077070.1 , HORVU4Hr1G008210.13 , HORVU4Hr1G008210.12 , HORVU4Hr1G008210.11 , HORVU4Hr1G008210.10 , HORVU6Hr1G077070.2 , HORVU6Hr1G077070.17 , HORVU6Hr1G077070.16 , HORVU6Hr1G077070.15 , HORVU6Hr1G077070.14 , HORVU6Hr1G077070.13 , HORVU6Hr1G077070.12 , HORVU6Hr1G077070.11 , HORVU6Hr1G077070.7 , HORVU6Hr1G077070.6 , HORVU6Hr1G077070.4 , HORVU6Hr1G077070.9 , HORVU6Hr1G077070.8
Wheat TraesCS4D02G050400 , TraesCS4D02G050400 , TraesCS6D02G291900 , TraesCS6A02G312500 , TraesCS4D02G050400 , TraesCS6A02G312500 , TraesCS4B02G050200 , TraesCS4A02G264800 , TraesCS4B02G050200 , TraesCS6B02G342700 , TraesCS6B02G342700
Populus PNT24507 , PNT24506


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G235000 protein kinase domain containing protein, expressed -
2 Sobic.002G333500 serine/threonine-protein kinase receptor precursor, putative, expressed -
3 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
4 Sobic.004G344901 - K10357: myosin V
5 Sobic.002G127400 glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.001G163400 roothairless 1, putative, expressed -
7 Sobic.001G119800 expressed protein -
8 Sobic.002G408800 protein kinase family protein, putative, expressed K08819: cyclin-dependent kinase 12/13
9 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
10 Sobic.004G135200 expressed protein -
11 Sobic.006G146800 CK1_CaseinKinase_1.7 - CK1 includes the casein kinase 1 kinases, expressed K08960: casein kinase 1, epsilon
12 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
13 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.007G010900 esterase, putative, expressed -
15 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
16 Sobic.003G314700 expressed protein -
17 Sobic.009G105900 amino acid permease family protein, putative, expressed K14427: SLC12A4_6, solute carrier family 12 (potassium/chloride transporter), member 4/6
18 Sobic.003G126600 rab GDP dissociation inhibitor alpha, putative, expressed -
19 Sobic.010G269100 zinc finger family protein, putative, expressed -
20 Sobic.009G229300 glycosyltransferase family 43 protein, putative, expressed -


Gene co-expression network
sample Sobic004G245000 Sobic004G245000 Sobic003G235000 Sobic003G235000 Sobic004G245000--Sobic003G235000 Sobic002G333500 Sobic002G333500 Sobic004G245000--Sobic002G333500 Sobic010G017800 Sobic010G017800 Sobic004G245000--Sobic010G017800 Sobic004G344901 Sobic004G344901 Sobic004G245000--Sobic004G344901 Sobic002G127400 Sobic002G127400 Sobic004G245000--Sobic002G127400 Sobic001G163400 Sobic001G163400 Sobic004G245000--Sobic001G163400 Sobic001G119800 Sobic001G119800 Sobic004G245000--Sobic001G119800 Sobic002G408800 Sobic002G408800 Sobic004G245000--Sobic002G408800 Sobic005G216300 Sobic005G216300 Sobic004G245000--Sobic005G216300 Sobic005G163700 Sobic005G163700 Sobic003G235000--Sobic005G163700 Sobic003G235000--Sobic002G127400 Sobic004G047200 Sobic004G047200 Sobic003G235000--Sobic004G047200 Sobic001G460500 Sobic001G460500 Sobic003G235000--Sobic001G460500 Sobic008G088851 Sobic008G088851 Sobic003G235000--Sobic008G088851 Sobic007G187900 Sobic007G187900 Sobic003G235000--Sobic007G187900 Sobic003G235000--Sobic004G245000 Sobic009G105900 Sobic009G105900 Sobic003G235000--Sobic009G105900 Sobic003G294600 Sobic003G294600 Sobic003G235000--Sobic003G294600 Sobic008G089700 Sobic008G089700 Sobic002G333500--Sobic008G089700 Sobic004G039600 Sobic004G039600 Sobic002G333500--Sobic004G039600 Sobic009G226400 Sobic009G226400 Sobic002G333500--Sobic009G226400 Sobic007G184500 Sobic007G184500 Sobic002G333500--Sobic007G184500 Sobic002G333500--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic002G333500--Sobic001G371200 Sobic010G125200 Sobic010G125200 Sobic002G333500--Sobic010G125200 Sobic002G111600 Sobic002G111600 Sobic002G333500--Sobic002G111600 Sobic006G252700 Sobic006G252700 Sobic002G333500--Sobic006G252700 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic001G518400 Sobic001G518400 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic001G335900 Sobic001G335900 Sobic010G017800--Sobic001G335900 Sobic009G229600 Sobic009G229600 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic010G017800--Sobic005G216300 Sobic010G017800--Sobic001G371200 Sobic003G340900 Sobic003G340900 Sobic010G017800--Sobic003G340900 Sobic003G331400 Sobic003G331400 Sobic004G344901--Sobic003G331400 Sobic003G337300 Sobic003G337300 Sobic004G344901--Sobic003G337300 Sobic004G344901--Sobic001G163400 Sobic006G131000 Sobic006G131000 Sobic004G344901--Sobic006G131000 Sobic004G004300 Sobic004G004300 Sobic004G344901--Sobic004G004300 Sobic001G415300 Sobic001G415300 Sobic004G344901--Sobic001G415300 Sobic008G003700 Sobic008G003700 Sobic004G344901--Sobic008G003700 Sobic001G281100 Sobic001G281100 Sobic004G344901--Sobic001G281100 Sobic002G137400 Sobic002G137400 Sobic004G344901--Sobic002G137400 Sobic001G338800 Sobic001G338800 Sobic002G127400--Sobic001G338800 Sobic002G127400--Sobic003G294600 Sobic003G435500 Sobic003G435500 Sobic002G127400--Sobic003G435500 Sobic002G127400--Sobic005G216300 Sobic002G127400--Sobic001G335900 Sobic002G127400--Sobic001G518400 Sobic009G142000 Sobic009G142000 Sobic002G127400--Sobic009G142000 Sobic010G138900 Sobic010G138900 Sobic002G127400--Sobic010G138900 Sobic003G314700 Sobic003G314700 Sobic002G127400--Sobic003G314700 Sobic001G163400--Sobic004G344901 Sobic001G163400--Sobic003G337300 Sobic001G015800 Sobic001G015800 Sobic001G163400--Sobic001G015800 Sobic001G163400--Sobic006G131000 Sobic001G163400--Sobic004G039600 Sobic001G096000 Sobic001G096000 Sobic001G163400--Sobic001G096000 Sobic001G163400--Sobic001G415300 Sobic001G124200 Sobic001G124200 Sobic001G163400--Sobic001G124200 Sobic006G163800 Sobic006G163800 Sobic001G163400--Sobic006G163800 Sobic008G015200 Sobic008G015200 Sobic001G119800--Sobic008G015200 Sobic002G427300 Sobic002G427300 Sobic001G119800--Sobic002G427300 Sobic003G389300 Sobic003G389300 Sobic001G119800--Sobic003G389300 Sobic006G112100 Sobic006G112100 Sobic001G119800--Sobic006G112100 Sobic001G119800--Sobic003G435500 Sobic001G119800--Sobic003G314700 Sobic006G281000 Sobic006G281000 Sobic001G119800--Sobic006G281000 Sobic001G385400 Sobic001G385400 Sobic001G119800--Sobic001G385400 Sobic006G156300 Sobic006G156300 Sobic001G119800--Sobic006G156300 Sobic007G120800 Sobic007G120800 Sobic002G408800--Sobic007G120800 Sobic003G029600 Sobic003G029600 Sobic002G408800--Sobic003G029600 Sobic002G029300 Sobic002G029300 Sobic002G408800--Sobic002G029300 Sobic009G049400 Sobic009G049400 Sobic002G408800--Sobic009G049400 Sobic005G074100 Sobic005G074100 Sobic002G408800--Sobic005G074100 Sobic001G322000 Sobic001G322000 Sobic002G408800--Sobic001G322000 Sobic006G056200 Sobic006G056200 Sobic002G408800--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic002G408800--Sobic009G231700 Sobic010G216000 Sobic010G216000 Sobic002G408800--Sobic010G216000 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic005G216300--Sobic007G027700 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500
Octagon: transcription factors


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