Gene annotation
Transcriptome id Sobic.004G279000.1
Synonym Sb04g031560, ATL8
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5Y0W2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF187
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G76410 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g46100.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a010027 , Zm00025a032356 , Zm00025a021566
Brachypodium KQK00813 , PNT75296 , KQK00823
Barley HORVU6Hr1G029910.1 , HORVU6Hr1G004090.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G066800 - -
2 Sobic.003G373000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
4 Sobic.010G041700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
5 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
6 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
7 Sobic.009G247300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY11, expressed -
8 Sobic.003G035700 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
10 Sobic.007G077001 - -
11 Sobic.008G074900 - -
12 Sobic.001G489600 expressed protein -
13 Sobic.002G214800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
14 Sobic.004G147900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
15 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
16 Sobic.003G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
17 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
18 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.007G101800 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed -
20 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G279000 Sobic004G279000 Sobic009G066800 Sobic009G066800 Sobic004G279000--Sobic009G066800 Sobic003G373000 Sobic003G373000 Sobic004G279000--Sobic003G373000 Sobic004G286600 Sobic004G286600 Sobic004G279000--Sobic004G286600 Sobic010G041700 Sobic010G041700 Sobic004G279000--Sobic010G041700 Sobic007G011000 Sobic007G011000 Sobic004G279000--Sobic007G011000 Sobic006G095600 Sobic006G095600 Sobic004G279000--Sobic006G095600 Sobic009G247300 Sobic009G247300 Sobic004G279000--Sobic009G247300 Sobic003G035700 Sobic003G035700 Sobic004G279000--Sobic003G035700 Sobic001G473900 Sobic001G473900 Sobic004G279000--Sobic001G473900 Sobic002G036150 Sobic002G036150 Sobic009G066800--Sobic002G036150 Sobic005G010200 Sobic005G010200 Sobic009G066800--Sobic005G010200 Sobic010G200700 Sobic010G200700 Sobic009G066800--Sobic010G200700 Sobic009G066800--Sobic009G247300 Sobic002G036100 Sobic002G036100 Sobic009G066800--Sobic002G036100 Sobic009G111200 Sobic009G111200 Sobic009G066800--Sobic009G111200 Sobic006G089300 Sobic006G089300 Sobic009G066800--Sobic006G089300 Sobic009G066800--Sobic010G041700 Sobic002G359300 Sobic002G359300 Sobic009G066800--Sobic002G359300 Sobic003G373000--Sobic010G200700 Sobic003G012800 Sobic003G012800 Sobic003G373000--Sobic003G012800 Sobic003G373000--Sobic002G036100 Sobic003G373000--Sobic004G286600 Sobic010G245800 Sobic010G245800 Sobic003G373000--Sobic010G245800 Sobic003G373000--Sobic006G089300 Sobic003G373000--Sobic009G066800 Sobic001G513700 Sobic001G513700 Sobic003G373000--Sobic001G513700 Sobic001G077400 Sobic001G077400 Sobic003G373000--Sobic001G077400 Sobic008G177800 Sobic008G177800 Sobic004G286600--Sobic008G177800 Sobic006G231100 Sobic006G231100 Sobic004G286600--Sobic006G231100 Sobic002G294700 Sobic002G294700 Sobic004G286600--Sobic002G294700 Sobic001G077700 Sobic001G077700 Sobic004G286600--Sobic001G077700 Sobic010G234600 Sobic010G234600 Sobic004G286600--Sobic010G234600 Sobic004G286600--Sobic002G036100 Sobic002G248100 Sobic002G248100 Sobic004G286600--Sobic002G248100 Sobic006G179500 Sobic006G179500 Sobic004G286600--Sobic006G179500 Sobic002G140300 Sobic002G140300 Sobic004G286600--Sobic002G140300 Sobic009G046600 Sobic009G046600 Sobic010G041700--Sobic009G046600 Sobic010G041700--Sobic005G010200 Sobic010G041700--Sobic006G089300 Sobic007G151100 Sobic007G151100 Sobic010G041700--Sobic007G151100 Sobic002G374100 Sobic002G374100 Sobic010G041700--Sobic002G374100 Sobic010G041700--Sobic009G066800 Sobic009G129000 Sobic009G129000 Sobic010G041700--Sobic009G129000 Sobic001G483400 Sobic001G483400 Sobic010G041700--Sobic001G483400 Sobic002G272900 Sobic002G272900 Sobic010G041700--Sobic002G272900 Sobic002G118600 Sobic002G118600 Sobic007G011000--Sobic002G118600 Sobic002G330300 Sobic002G330300 Sobic007G011000--Sobic002G330300 Sobic010G228000 Sobic010G228000 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic004G280800 Sobic004G280800 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic001G489600 Sobic001G489600 Sobic006G095600--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic006G095600--Sobic001G476400 Sobic009G247300--Sobic002G036100 Sobic009G247300--Sobic009G066800 Sobic004G297200 Sobic004G297200 Sobic009G247300--Sobic004G297200 Sobic001G259600 Sobic001G259600 Sobic009G247300--Sobic001G259600 Sobic001G040200 Sobic001G040200 Sobic009G247300--Sobic001G040200 Sobic002G174200 Sobic002G174200 Sobic009G247300--Sobic002G174200 Sobic009G247300--Sobic006G089300 Sobic009G247300--Sobic010G200700 Sobic009G247300--Sobic004G286600 Sobic003G423500 Sobic003G423500 Sobic003G035700--Sobic003G423500 Sobic004G147900 Sobic004G147900 Sobic003G035700--Sobic004G147900 Sobic003G035700--Sobic010G200700 Sobic004G195300 Sobic004G195300 Sobic003G035700--Sobic004G195300 Sobic003G035700--Sobic004G297200 Sobic010G078600 Sobic010G078600 Sobic003G035700--Sobic010G078600 Sobic001G290400 Sobic001G290400 Sobic003G035700--Sobic001G290400 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic001G473900--Sobic001G476400 Sobic010G076600 Sobic010G076600 Sobic001G473900--Sobic010G076600 Sobic001G473900--Sobic002G203000 Sobic001G473900--Sobic009G071800 Sobic001G473900--Sobic001G077700 Sobic001G473900--Sobic006G095600 Sobic001G209800 Sobic001G209800 Sobic001G473900--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic001G473900--Sobic003G268700 Sobic001G473900--Sobic002G248100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.